hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-15314997/chunk_1/iprscan-20080809-15314997.nocrc
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Query sequence: fh12209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.fs Protein kinase domain                        72.8    1.4e-20   1
PF00069.15.ls Protein kinase domain                        -9.4    4.9e-08   1
PF07714.7.fs Protein tyrosine kinase                      10.2     0.0073   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1      82   224 ..     1   160 [.    72.8  1.4e-20
PF07714.7.fs   1/1      82   114 ..     1    34 [.    10.2   0.0073
PF00069.15.ls   1/1      82   285 ..     1   287 []    -9.4  4.9e-08

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 82 to 224: score 72.8, E = 1.4e-20
                   *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt
                      ++++ k+G+G+f++Vy+a+ +    ++++ A+K +   +     +++
     fh12209    82    FKIEDKIGEGTFSSVYLATAQLQVGpeeKIALKHLIPTSHPI--RIA 126  

                   arrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfd
                   a    E+q l   ++ +N+   +++f+ +dh+ + ++y+e+     +  d
     fh12209   127 A----ELQCLTVAgGQDNVMGVKYCFRKNDHVVIAMPYLEHE----SFLD 168  

                   ylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld
                   +l       +l  s +e++ ++l ++++l+ +H+ gi+HRD+KP+N+L++
     fh12209   169 ILN------SL--SFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYN 210  

                   nngvvdaflKiaDFGlA<-*
                   ++        + DFGlA   
     fh12209   211 RRLKK---YALVDFGLA    224  

PF07714.7.fs: domain 1 of 1, from 82 to 114: score 10.2, E = 0.0073
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVK<-*
                      +k+  k+GeG F +Vy++t+  ++ g+e k A K   
     fh12209    82    FKIEDKIGEGTFSSVYLATAQ-LQVGPEEKIALK    114  

PF00069.15.ls: domain 1 of 1, from 82 to 285: score -9.4, E = 4.9e-08
                   *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt
                      ++++ k+G+G+f++Vy+a+ +    ++++ A+K +   +     +++
     fh12209    82    FKIEDKIGEGTFSSVYLATAQLQVGpeeKIALKHLIPTSHPI--RIA 126  

                   arrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfd
                   a    E+q l   ++ +N+   +++f+ +dh+ + ++y+e+     +  d
     fh12209   127 A----ELQCLTVAgGQDNVMGVKYCFRKNDHVVIAMPYLEHE----SFLD 168  

                   ylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld
                   +l       +l  s +e++ ++l ++++l+ +H+ gi+HRD+KP+N+L++
     fh12209   169 ILN------SL--SFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYN 210  

                   nngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngyg
                   ++        + DFGlA     +++++             E+l+      
     fh12209   211 RRLKK---YALVDFGLAQ---GtHDTkI------------ELLK------ 236  

                   tkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspe
                              + +    +  +s +     +  ++i  ++  pl+ + p+
     fh12209   237 -----------FVQSEAQQERCS-Q-----NKSHIITGNKI-PLSGPVPK 268  

                   wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                   +                         L++  +   +    ++ P+    
     fh12209   269 E-------------------------LDQQSTTKAS----VKRPYT    285  

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