hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-15314997/chunk_1/iprscan-20080809-15314997.nocrc
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Query sequence: fh12209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                  39.0    4.3e-12   1
SM00219                                                -107.6    0.00018   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      82   324 ..     1   280 []  -107.6  0.00018
SM00220    1/1      82   316 ..     1   231 []    39.0  4.3e-12

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 82 to 324: score -107.6, E = 0.00018
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda.keeFlrE
                       + ++k+GeG F  Vy++t+  + +++++ A K L + ++   +  E
     fh12209    82    FKIEDKIGEGTFSSVYLATAQlqvgpeEKIALKHLIPTShPIRIAAE 128  

                   akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL
                   ++ ++  G   +N+     + ++        + + i m y e+ + ld L
     fh12209   129 LQCLTVAG-GQDNVMGVKYCFRKN-------DHVVIAMPYLEHESFLDIL 170  

                   rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk...
                     n   ls ++  +++l   k    +++ ++vHRD    N L+++++++ 
     fh12209   171 --NS--LSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLkky 216  

                   .vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                     v   DFGL+   +d  k     +  +                  E+ +
     fh12209   217 aLV---DFGLAQGTHDT-KI----ELLKF-----VQ---------SEAQQ 244  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqq.fmsneevleylkkGy
                   +++   kS           i t  + P +g++ ++    +   + +k+ y
     fh12209   245 ERCSQNKSH----------IITGNKIPLSGPVPKeLDQQSTTKASVKRPY 284  

                   RlpkPendlpiSsvtCPdelYd.lMlqCWaedPedRPtFsel......ve
                      + +            +  + l l   ++    R +F+++  ++++ +
     fh12209   285 TNAQIQI--------KQGKDGKvLSLLFLKY----RHCFRNIllqpteGD 322  

                   rl<-*
                   r+   
     fh12209   323 RI    324  

SM00220: domain 1 of 1, from 82 to 316: score 39.0, E = 4.3e-12
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik.....erilrE
                      +++ +k+G+G+F++Vyla+   + +  ++ A+K + ++++++ri  E
     fh12209    82    FKIEDKIGEGTFSSVYLATAQLqvgPEEKIALKHLIptshpIRIAAE 128  

                   ikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   +++L   ++ +N+   +++f+ +d++ + m y+e+   + +d+l +    
     fh12209   129 LQCLTVagGQDNVMGVKYCFRKnDHVVIAMPYLEH--ESFLDILNS---- 172  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds...hvK
                        ls +e+r y+  +++aL+ +H+ gI+HRD+KP+N L +++ +   
     fh12209   173 -----LSFqEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRrlkKYA 217  

                   laDFGlArql.ttfvGTpeYmAPEvl..........gYgkpavDiWSlGc
                   l DFGlA   ++t +        E+l+  +++ +++  +  ++       
     fh12209   218 LVDFGLAQGThDTKI--------ELLkfvqseaqqeRCSQNKS------- 252  

                   ilyElltGkpPFp.qldlifkkig...................SpeakdL
                      +    k P ++ + + +++  +++ + ++++++     +  +++k  
     fh12209   253 --HIITGNKIPLSgPVPKELDQQSttkasvkrpytnaqiqikqGKDGK-V 299  

                   ikklLvkdPekRltaeaLedeldikaHPff<-*
                   ++ l+ k         +++          +   
     fh12209   300 LSLLFLKYRH------CFR-------NILL    316  

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