hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-15380936/chunk_1/iprscan-20080809-15380936.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh12212 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01044.9.fs Vinculin family 2045.1 0 2 PF01044.9.ls Vinculin family 2028.2 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01044.9.fs 1/2 33 495 .. 1 472 [. 792.5 2.2e-235 PF01044.9.ls 1/1 33 1096 .] 1 1019 [] 2028.2 0 PF01044.9.fs 2/2 496 1096 .] 370 1019 .] 1252.6 0 Alignments of top-scoring domains: PF01044.9.fs: domain 1 of 2, from 33 to 495: score 792.5, E = 2.2e-235 *->vfrTktvEkiLEPlaqQVsrLVithekgesekdggavkdLtapVaaV vf+T+t+E+iLEP+aqQ+s+LVi+he e+e+dg+a++dLtapVaaV fh12212 33 VFHTRTIESILEPVAQQISHLVIMHE--EGEVDGKAIPDLTAPVAAV 77 saAvsNlikvGedianesddrILkqdMppAlerVektgqlleeAsrelae +aAvsNl++vG++++++++d+ILk+dMppA+++Ve+++++l++A+++l++ fh12212 78 QAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQS 127 DPySsvaRkklirgaRglLsavsrLLllfDeaeVrkIirvckkVldyLav DPyS++aR++li+g+Rg+Ls++s+LLl+fDeaeVrkIirvck++l+yL+v fh12212 128 DPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTV 177 aevaetmedLvqfvKdlgpeltklnkmvdrRqqELthqvhRdiLvaardt aev+etmedLv+++K+lgp++tk++km+d+RqqELthq+hR++Lv++++t fh12212 178 AEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNT 227 lKklaPiLitAmKifvrhkeepqqgveeAreNRdytakrmsdelneIirV +K+l+P+Li+AmKifv++k++++qg+eeA++NR++t+++ms+e+neIirV fh12212 228 VKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRV 277 lQltsyDEDewdsdnvtvmkkalsaigseLaaAldwLddpnArpGavGEk lQlts+DED+w+s+++++mk+al++i+s+L++A++wL+dp A+pG++GE+ fh12212 278 LQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQ 327 iiRqIiDpatyieercrPsleeriesiisgaasMADslCtlrnrgqpgas +iRqI+D+a++++e+c+++++++i+++++++++M+D++++lr+rgq g+s fh12212 328 AIRQILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQ-GSS 376 plaivkarrlaEcnGskEisglvaeALqnlqRaGvant..AhtleGrlEQ p+a++ka+++ ++ + n+ R a t++ ++ ++ fh12212 377 PVAMQKAQQVSQGL------DVLTAKVENAARKLEAMTnsKQSIAKKIDA 420 AlRWldnPgvDDgGlgrqAlqdLlsEyrklagrkdhgqyrqdldaLcdaI A+ Wl P + g g+ +++ l+E+rk a+ +d +++r d++ +I fh12212 421 AQNWLADP--NGGPEGEEQIRGALAEARKIAELCDDPKERDDILRSLGEI 468 DrlaaQLADLemrkkgksPaAraianQ<-* l+ LADL +++kg sP+Ara+a+Q fh12212 469 SALTSKLADLRRQGKGDSPEARALAKQ 495 PF01044.9.ls: domain 1 of 1, from 33 to 1096: score 2028.2, E = 0 *->vfrTktvEkiLEPlaqQVsrLVithekgesekdggavkdLtapVaaV vf+T+t+E+iLEP+aqQ+s+LVi+he e+e+dg+a++dLtapVaaV fh12212 33 VFHTRTIESILEPVAQQISHLVIMHE--EGEVDGKAIPDLTAPVAAV 77 saAvsNlikvGedianesddrILkqdMppAlerVektgqlleeAsrelae +aAvsNl++vG++++++++d+ILk+dMppA+++Ve+++++l++A+++l++ fh12212 78 QAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQS 127 DPySsvaRkklirgaRglLsavsrLLllfDeaeVrkIirvckkVldyLav DPyS++aR++li+g+Rg+Ls++s+LLl+fDeaeVrkIirvck++l+yL+v fh12212 128 DPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTV 177 aevaetmedLvqfvKdlgpeltklnkmvdrRqqELthqvhRdiLvaardt aev+etmedLv+++K+lgp++tk++km+d+RqqELthq+hR++Lv++++t fh12212 178 AEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNT 227 lKklaPiLitAmKifvrhkeepqqgveeAreNRdytakrmsdelneIirV +K+l+P+Li+AmKifv++k++++qg+eeA++NR++t+++ms+e+neIirV fh12212 228 VKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRV 277 lQltsyDEDewdsdnvtvmkkalsaigseLaaAldwLddpnArpGavGEk lQlts+DED+w+s+++++mk+al++i+s+L++A++wL+dp A+pG++GE+ fh12212 278 LQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQ 327 iiRqIiDpatyieercrPsleeriesiisgaasMADslCtlrnrgqpgas +iRqI+D+a++++e+c+++++++i+++++++++M+D++++lr+rgq g+s fh12212 328 AIRQILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQ-GSS 376 plaivk............................................ p+a++k ++ +++ + + + ++ ++ + ++++++ ++ + ++ fh12212 377 PVAMQKaqqvsqgldvltakvenaarkleamtnskqsiakkidaaqnwla 426 ..................arrlaEcn.............GskEisgl... +++++++++++ ++ +ar++aE++++++++++ ++ G Eis+l+++ fh12212 427 dpnggpegeeqirgalaeARKIAELCddpkerddilrslG--EISALtsk 474 .....................vaeALqnlq....RaGv....antAhtle + ++++++++++ + ++va+ALqnlq++++Ra++++++a++A++le fh12212 475 ladlrrqgkgdspearalakqVATALQNLQtktnRAVAnsrpAKAAVHLE 524 GrlEQAlRWldnPgvDDgGlgrqAlqdLlsEyrklagrkdhgqyrqdlda G++EQA+RW+dnP+vDD+G+g++A+++L++E+++la++++ g+yrqdl+a fh12212 525 GKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMM-GPYRQDLLA 573 LcdaIDrlaaQLADLemrkkgksPaAraianQLqdkLkDLrrqlrkAvvD +cd++D+l+aQLADL++r++g+sP+Ara+a+QLqd+LkDL++++++A+++ fh12212 574 KCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQEAMTQ 623 hVSDsFlDttTPLklLieAAkappdtPGrEenfeekaknFqeHAnrlvev +VSD+F+DttTP+klL++AA+appd+P+rEe+f+e+a+nF++H+ +l+++ fh12212 624 EVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGAT 673 ArLaasvgpcnNketVeairaaAaqvesLtPQVInAAriLlhnPgSkaAq A++aa+vg ++Nk+tVe+i+a+++++++LtPQV++AAriLl+nPg++aA+ fh12212 674 AEKAAAVG-TANKSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAY 722 EhmetlKnqWedqVrrLTeaVDditdtdDFLavSEehIleDvnkCvvAiq Eh+et+KnqW+d+V+++T++VD+++dt+++L++SEe+I++D++kC+vA++ fh12212 723 EHFETMKNQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMA 772 anastPdenaadpqtLvatAgsIarranRVllVvkaEmdNsEdpvfterV + +pq+Lva+A+sIarranR+llV+k+E++NsEdp+f+e+V fh12212 773 N---------IQPQMLVAGATSIARRANRILLVAKREVENSEDPKFREAV 813 keAakiLsntippmvadakevAvnaldpgGltWaaksweenneefldAvr k+A+++Ls+ti+pmv+dak+vA+n++dpg ++ks++++++++l+Av+ fh12212 814 KAASDELSKTISPMVMDAKAVAGNISDPG----LQKSFLDSGYRILGAVA 859 lVyDAvrGvpqsrdirkavLmnrlpeelptdseledklviqEdepadprp +V++A++ ++++ ++p+++p++++l+ +de a+p+p fh12212 860 KVREAFQ-------PQEP----DFPPPPPDLEQLR-----LTDELAPPKP 893 pspvetepqpprpppppetdreemrrlfeEeKakiaaqvqpflaaarkLh p+p+++ p pprpppp+e+d+e f+E+Ka ++ + qp+++aar+Lh fh12212 894 PLPEGEVP-PPRPPPPEEKDEE-----FPEQKAGEVIN-QPMMMAARQLH 936 qEvaKWdskGNDIIalAKrMailMaeMsdlvRGkGpLktkrDlInaAKkI +E++KW+skGNDIIa+AKrMa+lMaeMs+lvRG++ +tkr+lI++AK+I fh12212 937 DEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGS--GTKRALIQCAKDI 984 AeaseevtrLAreiArqCtDsrirtdLLavleRIplictQLkIlSkVKAt A+as+evtrLA+e+A+qCtD+rirt+LL+v+eRIp+i+tQLkIlS+VKAt fh12212 985 AKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKAT 1034 vlgignviGPYGqPvElsvedleqaaesLvqnAqNLMqSVkeTVraAevA +lg++n +s+e++eqa+e+Lv+nAqNLMqSVkeTVr+Ae+A fh12212 1035 MLGRTN----------ISDEESEQATEMLVHNAQNLMQSVKETVREAEAA 1074 SiKiRtdqqgagtvssprlrWkrKaPwkq<-* SiKiRtd ++++lrW+rK+Pw+q fh12212 1075 SIKIRTD-------AGFTLRWVRKTPWYQ 1096 PF01044.9.fs: domain 2 of 2, from 496 to 1096: score 1252.6, E = 0 *->vaeALqnlq....RaGv....antAhtleGrlEQAlRWldnPgvDDg va+ALqnlq++++Ra++++++a++A++leG++EQA+RW+dnP+vDD+ fh12212 496 VATALQNLQtktnRAVAnsrpAKAAVHLEGKIEQAQRWIDNPTVDDR 542 GlgrqAlqdLlsEyrklagrkdhgqyrqdldaLcdaIDrlaaQLADLemr G+g++A+++L++E+++la++++ g+yrqdl+a+cd++D+l+aQLADL++r fh12212 543 GVGQAAIRGLVAEGHRLANVMM-GPYRQDLLAKCDRVDQLTAQLADLAAR 591 kkgksPaAraianQLqdkLkDLrrqlrkAvvDhVSDsFlDttTPLklLie ++g+sP+Ara+a+QLqd+LkDL++++++A++++VSD+F+DttTP+klL++ fh12212 592 GEGESPQARALASQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAV 641 AAkappdtPGrEenfeekaknFqeHAnrlvevArLaasvgpcnNketVea AA+appd+P+rEe+f+e+a+nF++H+ +l+++A++aa+vg ++Nk+tVe+ fh12212 642 AATAPPDAPNREEVFDERAANFENHSGKLGATAEKAAAVG-TANKSTVEG 690 iraaAaqvesLtPQVInAAriLlhnPgSkaAqEhmetlKnqWedqVrrLT i+a+++++++LtPQV++AAriLl+nPg++aA+Eh+et+KnqW+d+V+++T fh12212 691 IQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMT 740 eaVDditdtdDFLavSEehIleDvnkCvvAiqanastPdenaadpqtLva ++VD+++dt+++L++SEe+I++D++kC+vA+++ +pq+Lva fh12212 741 GLVDEAIDTKSLLDASEEAIKKDLDKCKVAMAN---------IQPQMLVA 781 tAgsIarranRVllVvkaEmdNsEdpvfterVkeAakiLsntippmvada +A+sIarranR+llV+k+E++NsEdp+f+e+Vk+A+++Ls+ti+pmv+da fh12212 782 GATSIARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDA 831 kevAvnaldpgGltWaaksweenneefldAvrlVyDAvrGvpqsrdirka k+vA+n++dpg ++ks++++++++l+Av++V++A++ ++++ fh12212 832 KAVAGNISDPG----LQKSFLDSGYRILGAVAKVREAFQ-------PQEP 870 vLmnrlpeelptdseledklviqEdepadprppspvetepqpprpppppe ++p+++p++++l+ +de a+p+pp+p+++ p pprpppp+e fh12212 871 ----DFPPPPPDLEQLR-----LTDELAPPKPPLPEGEVP-PPRPPPPEE 910 tdreemrrlfeEeKakiaaqvqpflaaarkLhqEvaKWdskGNDIIalAK +d+e f+E+Ka ++ + qp+++aar+Lh+E++KW+skGNDIIa+AK fh12212 911 KDEE-----FPEQKAGEVIN-QPMMMAARQLHDEARKWSSKGNDIIAAAK 954 rMailMaeMsdlvRGkGpLktkrDlInaAKkIAeaseevtrLAreiArqC rMa+lMaeMs+lvRG++ +tkr+lI++AK+IA+as+evtrLA+e+A+qC fh12212 955 RMALLMAEMSRLVRGGS--GTKRALIQCAKDIAKASDEVTRLAKEVAKQC 1002 tDsrirtdLLavleRIplictQLkIlSkVKAtvlgignviGPYGqPvEls tD+rirt+LL+v+eRIp+i+tQLkIlS+VKAt+lg++n +s fh12212 1003 TDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN----------IS 1042 vedleqaaesLvqnAqNLMqSVkeTVraAevASiKiRtdqqgagtvsspr +e++eqa+e+Lv+nAqNLMqSVkeTVr+Ae+ASiKiRtd ++++ fh12212 1043 DEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTD-------AGFT 1085 lrWkrKaPwkq<-* lrW+rK+Pw+q fh12212 1086 LRWVRKTPWYQ 1096 //