hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-15443466/chunk_1/iprscan-20080809-15443466.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh12330 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 515.0 7.7e-152 1 PF07714.7.fs Protein tyrosine kinase 513.1 2.8e-151 1 PF01404.9.ls Ephrin receptor ligand binding domain 489.3 4.2e-144 1 PF01404.9.fs Ephrin receptor ligand binding domain 487.3 1.7e-143 1 PF00069.15.ls Protein kinase domain 160.5 4.1e-45 1 PF00069.15.fs Protein kinase domain 158.6 6e-45 1 PF00041.11.ls Fibronectin type III domain 129.9 6.4e-36 2 PF00041.11.fs Fibronectin type III domain 125.9 1.6e-35 2 PF07647.7.fs SAM domain (Sterile alpha motif) 64.1 3.8e-18 1 PF07647.7.ls SAM domain (Sterile alpha motif) 66.1 1.1e-16 1 PF00536.20.fs SAM domain (Sterile alpha motif) 58.5 1.3e-16 1 PF00536.20.ls SAM domain (Sterile alpha motif) 60.5 5.1e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01404.9.fs 1/1 28 201 .. 1 177 [] 487.3 1.7e-143 PF01404.9.ls 1/1 28 201 .. 1 177 [] 489.3 4.2e-144 PF00041.11.ls 1/2 325 418 .. 1 84 [] 54.7 2.8e-13 PF00041.11.fs 1/2 325 418 .. 1 84 [] 52.7 1.7e-14 PF00041.11.ls 2/2 436 520 .. 1 84 [] 75.2 1.9e-19 PF00041.11.fs 2/2 436 520 .. 1 84 [] 73.2 2.2e-20 PF00069.15.ls 1/1 620 877 .. 1 287 [] 160.5 4.1e-45 PF00069.15.fs 1/1 620 877 .. 1 287 [] 158.6 6e-45 PF07714.7.fs 1/1 620 877 .. 1 272 [] 513.1 2.8e-151 PF07714.7.ls 1/1 620 877 .. 1 272 [] 515.0 7.7e-152 PF07647.7.fs 1/1 907 974 .. 1 72 [] 64.1 3.8e-18 PF07647.7.ls 1/1 907 974 .. 1 72 [] 66.1 1.1e-16 PF00536.20.fs 1/1 908 972 .. 1 65 [] 58.5 1.3e-16 PF00536.20.ls 1/1 908 972 .. 1 65 [] 60.5 5.1e-15 Alignments of top-scoring domains: PF01404.9.fs: domain 1 of 1, from 28 to 201: score 487.3, E = 1.7e-143 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme Ev+LLD+kt++gELGW++yP++GWeE+sg+DE+++pIrTYQVCnVm+ fh12330 28 EVNLLDSKTIQGELGWISYPSHGWEEISGVDEHYTPIRTYQVCNVMD 74 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy ++QnNWLRTnw++R+ Aq++yveLkFT+RDCnS+P vlGtCKETFNLYY+ fh12330 75 HSQNNWLRTNWVPRNSAQKIYVELKFTLRDCNSIPLVLGTCKETFNLYYM 124 ESDedvgtalpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsvG ESD+d+g +++re+q++K+DTIAADESFtq+Dlgdr+lKLNtE+R+vG fh12330 125 ESDDDHG---VKFREHQFTKIDTIAADESFTQMDLGDRILKLNTEIREVG 171 PLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* P++KkGFYLAFQDvGAC+ALvSVRV++KKC fh12330 172 PVNKKGFYLAFQDVGACVALVSVRVYFKKC 201 PF01404.9.ls: domain 1 of 1, from 28 to 201: score 489.3, E = 4.2e-144 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme Ev+LLD+kt++gELGW++yP++GWeE+sg+DE+++pIrTYQVCnVm+ fh12330 28 EVNLLDSKTIQGELGWISYPSHGWEEISGVDEHYTPIRTYQVCNVMD 74 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy ++QnNWLRTnw++R+ Aq++yveLkFT+RDCnS+P vlGtCKETFNLYY+ fh12330 75 HSQNNWLRTNWVPRNSAQKIYVELKFTLRDCNSIPLVLGTCKETFNLYYM 124 ESDedvgtalpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsvG ESD+d+g +++re+q++K+DTIAADESFtq+Dlgdr+lKLNtE+R+vG fh12330 125 ESDDDHG---VKFREHQFTKIDTIAADESFTQMDLGDRILKLNTEIREVG 171 PLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* P++KkGFYLAFQDvGAC+ALvSVRV++KKC fh12330 172 PVNKKGFYLAFQDVGACVALVSVRVYFKKC 201 PF00041.11.ls: domain 1 of 2, from 325 to 418: score 54.7, E = 2.8e-13 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps+P+n+ ++++++ts+ l Ws P ++g+++ +++ + ++++ + fh12330 325 PSSPRNV-ISNINETSVILDWSWPLdtGGRKDVTFNIIC-KKCGWNI 369 .......wkeltvpgt...tt.sytltgLkPgteYtvrVqAvnggGGpeS ++ ++ +++ + +p++ + t++++t+t+L ++t+Yt+ + Avng+ ++ S fh12330 370 kqcepcsPNVRFLPRQfglTNtTVTVTDLLAHTNYTFEIDAVNGV-SELS 418 <-* fh12330 - - PF00041.11.fs: domain 1 of 2, from 325 to 418: score 52.7, E = 1.7e-14 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps+P+n+ ++++++ts+ l Ws P ++g+++ +++ + ++++ + fh12330 325 PSSPRNV-ISNINETSVILDWSWPLdtGGRKDVTFNIIC-KKCGWNI 369 .......wkeltvpgt...tt.sytltgLkPgteYtvrVqAvnggGGpeS ++ ++ +++ + +p++ + t++++t+t+L ++t+Yt+ + Avng+ ++ S fh12330 370 kqcepcsPNVRFLPRQfglTNtTVTVTDLLAHTNYTFEIDAVNGV-SELS 418 <-* fh12330 - - PF00041.11.ls: domain 2 of 2, from 436 to 520: score 75.2, E = 1.9e-19 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. Ps++ ++ ++ +s++lsW+ P+++ng i Yev+y ++k ++e+ fh12330 436 PSPVLTIKKDRTSRNSISLSWQEPEhPNGIILDYEVKY-YEKQEQEt 481 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ + t +t++ LkP+t Y+++++A++++G G S fh12330 482 SYTILRARGT-NVTISSLKPDTIYVFQIRARTAAGyGTNS 520 PF00041.11.fs: domain 2 of 2, from 436 to 520: score 73.2, E = 2.2e-20 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. Ps++ ++ ++ +s++lsW+ P+++ng i Yev+y ++k ++e+ fh12330 436 PSPVLTIKKDRTSRNSISLSWQEPEhPNGIILDYEVKY-YEKQEQEt 481 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ + t +t++ LkP+t Y+++++A++++G G S fh12330 482 SYTILRARGT-NVTISSLKPDTIYVFQIRARTAAGyGTNS 520 PF00069.15.ls: domain 1 of 1, from 620 to 877: score 160.5, E = 4.1e-45 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt + + +++G+G fG+V+ ++ k +k++ VA+K++k+ +++ +++ fh12330 620 ISIDKVVGAGEFGEVCSGRLKLPSKkeiSVAIKTLKVGYTEK--QRR 664 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy +++ E++i+ ++HpNI+rl +v++ ++ + +V+Ey+e+G +L ++ fh12330 665 DFLG-EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENG----SLDSF 709 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ + + + + ++ +++ i++g++YL ++g +HRDL NIL+++ fh12330 710 LR--KHDAQF--TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 755 ngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvllggngy n v+ K++DFGl+++l+++ + ++ + +++ +PE + +++ fh12330 756 NLVC----KVSDFGLSRVLEddPeAAYtTRGGKIPIRWTSPEAIA-YRKF 800 gtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplefd ++++DvWS+G++l+e+++ G+ P+++ s+ d ++ +++ + p++ d fh12330 801 TSASDVWSYGIVLWEVMSyGERPYWEM---SnQDVIKAVDEGYRLPPPMD 847 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +p ++ +L+ +c++kD + R+ +e+i+ + fh12330 848 CP-----------------AALYQLMLDCWQKDRNNRPKFEQIVSI--L 877 -* fh12330 - - PF00069.15.fs: domain 1 of 1, from 620 to 877: score 158.6, E = 6e-45 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt + + +++G+G fG+V+ ++ k +k++ VA+K++k+ +++ +++ fh12330 620 ISIDKVVGAGEFGEVCSGRLKLPSKkeiSVAIKTLKVGYTEK--QRR 664 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy +++ E++i+ ++HpNI+rl +v++ ++ + +V+Ey+e+G +L ++ fh12330 665 DFLG-EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENG----SLDSF 709 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ + + + + ++ +++ i++g++YL ++g +HRDL NIL+++ fh12330 710 LR--KHDAQF--TVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 755 ngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvllggngy n v+ K++DFGl+++l+++ + ++ + +++ +PE + +++ fh12330 756 NLVC----KVSDFGLSRVLEddPeAAYtTRGGKIPIRWTSPEAIA-YRKF 800 gtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplefd ++++DvWS+G++l+e+++ G+ P+++ s+ d ++ +++ + p++ d fh12330 801 TSASDVWSYGIVLWEVMSyGERPYWEM---SnQDVIKAVDEGYRLPPPMD 847 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< +p ++ +L+ +c++kD + R+ +e+i+ + fh12330 848 CP-----------------AALYQLMLDCWQKDRNNRPKFEQIVSI--L 877 -* fh12330 - - PF07714.7.fs: domain 1 of 1, from 620 to 877: score 513.1, E = 2.8e-151 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++++k+ G+G+FGeV+ G+lk +++++ei VA+KtLk g++e++ fh12330 620 ISIDKVVGAGEFGEVCSGRLK-LPSKKEISVAIKTLKV-GYTEKQ-- 662 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl EAsiM ++ dHpNi+rL Gv+tk ++P ++iVtEyme+G+L fh12330 663 RRDFLGEASIMGQF-DHPNIIRLEGVVTK-SKP----VMIVTEYMENGSL 706 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fLrkh + ++t+ +L+++ + iA+GM YL+++++vHRDLAARN+L++ fh12330 707 DSFLRKH--DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILIN 754 enlvVKIsDFGLaRdiynddyY.vrkkgggklPvkWmAPEslkygkFtsk +nlv+K+sDFGL+R + +dd +++ ggk+P++W++PE+++y+kFts+ fh12330 755 SNLVCKVSDFGLSRVL-EDDPEaAYTTRGGKIPIRWTSPEAIAYRKFTSA 803 SDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPde SDVWS+G++LWE++++Ge P Y++msn++v++ + ++GyRLp+P++CP+ fh12330 804 SDVWSYGIVLWEVMSYGERP-YWEMSNQDVIKAV-DEGYRLPPPMDCPAA 851 lYdlMlqCWaedPedRPtFselveeL<-* lY+lMl+CW++d ++RP F+++v++L fh12330 852 LYQLMLDCWQKDRNNRPKFEQIVSIL 877 PF07714.7.ls: domain 1 of 1, from 620 to 877: score 515.0, E = 7.7e-152 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie ++++k+ G+G+FGeV+ G+lk +++++ei VA+KtLk g++e++ fh12330 620 ISIDKVVGAGEFGEVCSGRLK-LPSKKEISVAIKTLKV-GYTEKQ-- 662 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl EAsiM ++ dHpNi+rL Gv+tk ++P ++iVtEyme+G+L fh12330 663 RRDFLGEASIMGQF-DHPNIIRLEGVVTK-SKP----VMIVTEYMENGSL 706 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fLrkh + ++t+ +L+++ + iA+GM YL+++++vHRDLAARN+L++ fh12330 707 DSFLRKH--DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILIN 754 enlvVKIsDFGLaRdiynddyY.vrkkgggklPvkWmAPEslkygkFtsk +nlv+K+sDFGL+R + +dd +++ ggk+P++W++PE+++y+kFts+ fh12330 755 SNLVCKVSDFGLSRVL-EDDPEaAYTTRGGKIPIRWTSPEAIAYRKFTSA 803 SDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPde SDVWS+G++LWE++++Ge P Y++msn++v++ + ++GyRLp+P++CP+ fh12330 804 SDVWSYGIVLWEVMSYGERP-YWEMSNQDVIKAV-DEGYRLPPPMDCPAA 851 lYdlMlqCWaedPedRPtFselveeL<-* lY+lMl+CW++d ++RP F+++v++L fh12330 852 LYQLMLDCWQKDRNNRPKFEQIVSIL 877 PF07647.7.fs: domain 1 of 1, from 907 to 974: score 64.1, E = 3.8e-18 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ +++ ++++WL ++ +++k++F++ ++++++ + ++++ +d+ fh12330 907 VDITTFRTTGDWLNGVWT-AHCKEIFTGVEYSSCDTI-AKISTDDM- 950 klalGitsvghRkkilkkiqelkqq<-* k + G+t vg++kki+++i+ l++q fh12330 951 K-KVGVTVVGPQKKIISSIKALETQ 974 PF07647.7.ls: domain 1 of 1, from 907 to 974: score 66.1, E = 1.1e-16 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v+ +++ ++++WL ++ +++k++F++ ++++++ + ++++ +d+ fh12330 907 VDITTFRTTGDWLNGVWT-AHCKEIFTGVEYSSCDTI-AKISTDDM- 950 klalGitsvghRkkilkkiqelkqq<-* k + G+t vg++kki+++i+ l++q fh12330 951 K-KVGVTVVGPQKKIISSIKALETQ 974 PF00536.20.fs: domain 1 of 1, from 908 to 972: score 58.5, E = 1.3e-16 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d ++f++ g+WL+ ++ ++ F+ +y+++dt++ ++ +D++++G fh12330 908 DITTFRTTGDWLNGVWTAHCKEIFTGVEYSSCDTIAKISTDDMKKVG 954 vtllGHrkKIlssIqgLk<-* vt +G++kKI ssI+ L fh12330 955 VTVVGPQKKIISSIKALE 972 PF00536.20.ls: domain 1 of 1, from 908 to 972: score 60.5, E = 5.1e-15 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d ++f++ g+WL+ ++ ++ F+ +y+++dt++ ++ +D++++G fh12330 908 DITTFRTTGDWLNGVWTAHCKEIFTGVEYSSCDTIAKISTDDMKKVG 954 vtllGHrkKIlssIqgLk<-* vt +G++kKI ssI+ L fh12330 955 VTVVGPQKKIISSIKALE 972 //