hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-15443466/chunk_1/iprscan-20080809-15443466.nocrc
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Query sequence: fh12330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 480.7     7e-140   1
SM00615                                                 439.6   1.7e-127   1
SM00220                                                 173.8    1.6e-47   1
SM00060                                                  90.1    2.6e-22   2
SM00454                                                  55.6    6.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00615    1/1      28   201 ..     1   184 []   439.6 1.7e-127
SM00060    1/2     325   417 ..     1    69 []    32.6  5.4e-05
SM00060    2/2     436   517 ..     1    69 []    57.5  1.7e-12
SM00220    1/1     620   881 ..     1   231 []   173.8  1.6e-47
SM00219    1/1     620   877 ..     1   280 []   480.7   7e-140
SM00454    1/1     907   974 ..     1    67 []    55.6  6.4e-12

Alignments of top-scoring domains:
SM00615: domain 1 of 1, from 28 to 201: score 439.6, E = 1.7e-127
                   *->EVvLLDtktetgeLgWttyPpsggtWeEvsglDeknnpiRtYqvCnV
                      EV+LLD+kt++geLgW++yP++g  WeE+sg+De+++piRtYqvCnV
     fh12330    28    EVNLLDSKTIQGELGWISYPSHG--WEEISGVDEHYTPIRTYQVCNV 72   

                   meinesnQNNWLrTnfIeRrgAsRiYVELkFTvRDCnSlpgvaglsCKET
                   m+   ++QNNWLrTn+++R++A++iYVELkFT+RDCnS+p v+g +CKET
     fh12330    73 MD---HSQNNWLRTNWVPRNSAQKIYVELKFTLRDCNSIPLVLG-TCKET 118  

                   FNLYYyEsDsdtatastpfwmenpyiKvDTiAADesftqvdlGdrvvklN
                   FNLYY+EsD+d++    +f+ e++++K+DTiAADesftq+dlGdr++klN
     fh12330   119 FNLYYMESDDDHG---VKFR-EHQFTKIDTIAADESFTQMDLGDRILKLN 164  

                   tevrsvGplskkGfYLAFQdqGACvaLlsVrVFYkkC<-*
                   te+r+vGp++kkGfYLAFQd+GACvaL+sVrV++kkC   
     fh12330   165 TEIREVGPVNKKGFYLAFQDVGACVALVSVRVYFKKC    201  

SM00060: domain 1 of 2, from 325 to 417: score 32.6, E = 5.4e-05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg
                      P++P+n    +++++++t      sv l W+ P + ++ ++    + 
     fh12330   325    PSSPRN----VISNINET------SVILDWSWPldtggrkdvtfNII 361  

                   Yr.............................ytltgLkPgaepwteYefr
                   +++ +++ ++ ++ +++++  +++ + +++++t+t+L ++    t+Y+f 
     fh12330   362 CKkcgwnikqcepcspnvrflprqfgltnttVTVTDLLAH----TNYTFE 407  

                   VrAvngndaGeg<-*
                   + Avng  + e    
     fh12330   408 IDAVNG--VSEL    417  

SM00060: domain 2 of 2, from 436 to 517: score 57.5, E = 1.7e-12
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P+p+     ++   ++++      s++lsW++P+++++ i+ Y+++ 
     fh12330   436    PSPVLT---IKKDRTSRN------SISLSWQEPehpngiILDYEvky 473  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                    ++++++++ +  + +++++t++ LkP+    t Y+f++rA+++  aG+g
     fh12330   474 yekqeqetsytilrargtnVTISSLKPD----TIYVFQIRARTA--AGYG 517  

                   <-*
                      
     fh12330     -     -    

SM00220: domain 1 of 1, from 620 to 881: score 173.8, E = 1.6e-47
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri
                        + k++G G FG+V+ +r k +++    vAiK +k + ++++++++
     fh12330   620    ISIDKVVGAGEFGEVCSGRLKLpskKEISVAIKTLKvgytekqrRDF 666  

                   lrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                   l E +i+ + dHPNI++L +v   ++ + +V+Ey+e+  G+L ++l+k+ 
     fh12330   667 LGEASIMGQfDHPNIIRLEGVVTKsKPVMIVTEYMEN--GSLDSFLRKHD 714  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                    +     ++  +   ++r i+s+++YL ++g +HRDL   NiL++s+ + 
     fh12330   715 AQ-----FTViQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSnlVC 759  

                   KlaDFGlArql..........ttfvGTpeYmAPEvl...gYgkpavDiWS
                   K++DFGl+r+l+++++   +++       + +PE +  ++++  a+D+WS
     fh12330   760 KVSDFGLSRVLeddpeaayttRGGKIPIRWTSPEAIayrKFTS-ASDVWS 808  

                   lGcilyEllt.GkpPFp..qldlifkkig...........SpeakdLikk
                    G++l+E ++ G+ P+++   + ++k + ++++ +++ + +  + +L+  
     fh12330   809 YGIVLWEVMSyGERPYWemSNQDVIKAVDegyrlpppmdcPAALYQLMLD 858  

                   lLvkdPekRlta.eaLedeldikaHPff<-*
                   +++kd ++R+  +++        ++  +   
     fh12330   859 CWQKDRNNRPKFeQIVS-----ILDKLI    881  

SM00219: domain 1 of 1, from 620 to 877: score 480.7, E = 7e-140
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF
                      ++ +k+ G G+FGeV+ G+lk +++++i VA+KtLk + +++++++F
     fh12330   620    ISIDKVVGAGEFGEVCSGRLKlpskkeISVAIKTLKVGYtekqRRDF 666  

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   l Ea+iM ++  +HpNi++L Gv+t++       +P+miv+Eyme+G+L+
     fh12330   667 LGEASIMGQF--DHPNIIRLEGVVTKS-------KPVMIVTEYMENGSLD 707  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   ++Lrk+  ++++ +L+ +   IA+GM YL+++++vHRDLAARN+L+++n+
     fh12330   708 SFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNL 757  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   v+K+sDFGLsR l+dd      +  Y+++   ggk  +PirW++PE++ +
     fh12330   758 VCKVSDFGLSRVLEDD-----PEAAYTTR---GGK--IPIRWTSPEAIAY 797  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   +kFts+SDVWS+G++LWE++++Ge PY++     msn++v++ +++GyRl
     fh12330   798 RKFTSASDVWSYGIVLWEVMSYGERPYWE-----MSNQDVIKAVDEGYRL 842  

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   p+P +        CP++lY+lMl+CW+ d ++RP F+++v++l   
     fh12330   843 PPPMD--------CPAALYQLMLDCWQKDRNNRPKFEQIVSIL    877  

SM00454: domain 1 of 1, from 907 to 974: score 55.6, E = 6.4e-12
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      v+  ++++ ++WL +   ++++++F+  ++++ + ++ +s +d+k++
     fh12330   907    VDiTTFRTTGDWLNGVWTAHCKEIFTGVEYSSCDTIAKISTDDMKKV 953  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+t +G++kkI+s+i+ l +q   
     fh12330   954 GVTVVGPQKKIISSIKALETQ    974  

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