hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-15514069/chunk_1/iprscan-20080809-15514069.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh12337 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.fs Protein tyrosine kinase 413.8 2.3e-121 1 PF07714.7.ls Protein tyrosine kinase 397.4 2e-116 1 PF09027.1.fs GTPase binding 156.2 6.9e-45 1 PF09027.1.ls GTPase binding 158.1 2.1e-44 1 PF00069.15.fs Protein kinase domain 116.7 4.9e-33 1 PF00069.15.ls Protein kinase domain 106.1 9.7e-29 1 PF00018.18.ls SH3 domain 9.1 0.0021 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07714.7.ls 1/1 12 261 .. 1 272 [] 397.4 2e-116 PF07714.7.fs 1/1 12 261 .. 16 272 .] 413.8 2.3e-121 PF00069.15.ls 1/1 16 261 .. 1 287 [] 106.1 9.7e-29 PF00069.15.fs 1/1 22 261 .. 18 287 .] 116.7 4.9e-33 PF00018.18.ls 1/1 267 322 .. 1 59 [] 9.1 0.0021 PF09027.1.fs 1/1 323 390 .. 1 71 [] 156.2 6.9e-45 PF09027.1.ls 1/1 323 390 .. 1 71 [] 158.1 2.1e-44 Alignments of top-scoring domains: PF07714.7.ls: domain 1 of 1, from 12 to 261: score 397.4, E = 2e-116 *->lklgkkLGeGaFGeVykGtlkg....sgdgteikVAVKtLke.igas + Gt+ ++ + ++++ VAVK+Lk+++ + fh12337 12 ---------------VSGTWQVlspcKSRSGQVSVAVKCLKPdVLSQ 43 eeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEym +e+ ++dF+rE++ M +l dH N++rL+Gv++ P + +VtE++ fh12337 44 PEA--MDDFIREVNAMHSL-DHRNLIRLYGVVL--TPP----MKMVTELA 84 egGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAAR ++G+Lld Lrkh ++++ l +L +a+Q+A+GM YLesk+f+HRDLAAR fh12337 85 PLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAAR 132 NcLVsenlvVKIsDFGLaRdi.ynddyYvrkkgggklPvkWmAPEslkyg N L++ VKI+DFGL+R++++ndd Y ++++++k+P W+APEslk++ fh12337 133 NLLLATRDLVKIGDFGLMRALpQNDDHY-VMQEHRKVPFAWCAPESLKTR 181 kFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPe F+++SD W+FGV+LWE+ft+G++P + g+ ++++l++++++G+RLprPe fh12337 182 TFSHASDTWMFGVTLWEMFTYGQEP-WIGLNGSQILHKIDKEGERLPRPE 230 nCPdelYdlMlqCWaedPedRPtFselveeL<-* +CP+++Y++M qCWa++PedRPtF +l+ +L fh12337 231 DCPQDIYNVMVQCWAHKPEDRPTFVALRDFL 261 PF07714.7.fs: domain 1 of 1, from 12 to 261: score 413.8, E = 2.3e-121 *->ykGtlkg....sgdgteikVAVKtLke.igaseeeieredFlrEAsi + Gt+ ++ + ++++ VAVK+Lk+++ + +e+ ++dF+rE++ fh12337 12 VSGTWQVlspcKSRSGQVSVAVKCLKPdVLSQPEA--MDDFIREVNA 56 MkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdLldfLrkhreg M +l dH N++rL+Gv++ P + +VtE++++G+Lld Lrkh + fh12337 57 MHSL-DHRNLIRLYGVVL--TPP----MKMVTELAPLGSLLDRLRKH--Q 97 rpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVsenlvVKIsDF +++ l +L +a+Q+A+GM YLesk+f+HRDLAARN L++ VKI+DF fh12337 98 GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDF 147 GLaRdi.ynddyYvrkkgggklPvkWmAPEslkygkFtskSDVWSFGVlL GL+R++++ndd Y ++++++k+P W+APEslk++ F+++SD W+FGV+L fh12337 148 GLMRALpQNDDHY-VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTL 196 WEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdelYdlMlqCWa WE+ft+G++P + g+ ++++l++++++G+RLprPe+CP+++Y++M qCWa fh12337 197 WEMFTYGQEP-WIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWA 245 edPedRPtFselveeL<-* ++PedRPtF +l+ +L fh12337 246 HKPEDRPTFVALRDFL 261 PF00069.15.ls: domain 1 of 1, from 16 to 261: score 106.1, E = 9.7e-29 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +++l++ +k ++ + VAvK++k + + + + ++ fh12337 16 WQVLSP-----------CKSRSGQVSVAVKCLKPDVLSQPEAMDDFI 51 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + E+ +++L+H N +rl++v+ +++ + +V+E+++ G +L d+l+ fh12337 52 R-EVNAMHSLDHRNLIRLYGVVLTPP-MKMVTELAPLG----SLLDRLR- 94 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv + +g + ++ ++a Q+++g+ YL s+++iHRDL N+Ll ++ fh12337 95 -KHQGHF--LLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDL 141 vdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvllggngygtk v Ki+DFGl + l ++ ++++ ++ + ++APE l+ + +++ fh12337 142 V----KIGDFGLMRALPqnDdHYVmQEHRKVPFAWCAPESLK-TRTFSHA 186 vDvWSlGvilyellt.GkpPFsgevqdsldqlqlirkilgpplefdspew +D W +Gv+l+e++t G+ P+ g + q++ ki ++ + ++pe+ fh12337 187 SDTWMFGVTLWEMFTyGQEPWIGL-----NGSQILHKIDKEGERLPRPED 231 dsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* ++ ++ ++ c++ +P++R+t+ + + fh12337 232 CP-------------QDIYNVMVQCWAHKPEDRPTFVALRDF--L 261 PF00069.15.fs: domain 1 of 1, from 22 to 261: score 116.7, E = 4.9e-33 *->akhkgtgkiVAvKiikkrkekskkdktarrlsEiqilkrLsHpNIvr +k ++ + VAvK++k + + + + ++ + E+ +++L+H N +r fh12337 22 CKSRSGQVSVAVKCLKPDVLSQPEAMDDFIR-EVNAMHSLDHRNLIR 67 lidvfedkdhlylVlEycegGLrvldLfdylsetrrkgpllfsedeakki l++v+ +++ + +V+E+++ G +L d+l+ + +g + ++ ++ fh12337 68 LYGVVLTPP-MKMVTELAPLG----SLLDRLR--KHQGHF--LLGTLSRY 108 alQilrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls a Q+++g+ YL s+++iHRDL N+Ll ++ v Ki+DFGl + l fh12337 109 AVQVAEGMGYLESKRFIHRDLAARNLLLATRDLV----KIGDFGLMRALP 154 ..t.sss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilyellt.G ++ ++++ ++ + ++APE l+ + ++++D W +Gv+l+e++t G fh12337 155 qnDdHYVmQEHRKVPFAWCAPESLK-TRTFSHASDTWMFGVTLWEMFTyG 203 kpPFsgevqdsldqlqlirkilgpplefdspewdsisrsefrrlpnlsee + P+ g + q++ ki ++ + ++pe+++ ++ fh12337 204 QEPWIGL-----NGSQILHKIDKEGERLPRPEDCP-------------QD 235 akdLikkcLnkDPskRltaeeilqHPwf<-* ++ c++ +P++R+t+ + + fh12337 236 IYNVMVQCWAHKPEDRPTFVALRDF--L 261 PF00018.18.ls: domain 1 of 1, from 267 to 322: score 9.1, E = 0.0021 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + +AL D+e e+d L ++ +Dvitv+e ++ WW+g++ +t+ fh12337 267 TDMRALQDFE--EPDKLHIQMNDVITVIEGRAENYWWRGQNTRTL-C 310 eGliPsNYVepv<-* +G +P N V+ v fh12337 311 VGPFPRNVVTSV 322 PF09027.1.fs: domain 1 of 1, from 323 to 390: score 156.2, E = 6.9e-45 *->AGvsAqdirvPLKngFiHtGqgisnprsCyWgspdefenlYLgNPiD AG+sAqdi++PL+n+FiHtG+g+s+pr+C Wg+pd++++lYLgNP+D fh12337 323 AGLSAQDISQPLQNSFIHTGHGDSDPRHC-WGFPDRIDELYLGNPMD 368 PidlayvllssaLrrPtqhlgrvg<-* P+dl++v+ls++ rP qhlg v+ fh12337 369 PPDLLSVELSTS--RPPQHLGGVK 390 PF09027.1.ls: domain 1 of 1, from 323 to 390: score 158.1, E = 2.1e-44 *->AGvsAqdirvPLKngFiHtGqgisnprsCyWgspdefenlYLgNPiD AG+sAqdi++PL+n+FiHtG+g+s+pr+C Wg+pd++++lYLgNP+D fh12337 323 AGLSAQDISQPLQNSFIHTGHGDSDPRHC-WGFPDRIDELYLGNPMD 368 PidlayvllssaLrrPtqhlgrvg<-* P+dl++v+ls++ rP qhlg v+ fh12337 369 PPDLLSVELSTS--RPPQHLGGVK 390 //