hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-15514069/chunk_1/iprscan-20080809-15514069.nocrc
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Query sequence: fh12337
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 383.3   1.4e-110   1
SM00220                                                 126.9    2.2e-33   1
SM00326                                                  40.3    2.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      12   261 ..     1   280 []   383.3 1.4e-110
SM00220    1/1      16   261 ..     1   231 []   126.9  2.2e-33
SM00326    1/1     267   323 ..     1    58 []    40.3  2.5e-07

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 12 to 261: score 383.3, E = 1.4e-110
                   *->ltlgkkLGeGaFGeVykGtlk...........ieVAVKtLkeda...
                                     + Gt+   ++ +++++++ VAVK+Lk+d  ++
     fh12337    12    ---------------VSGTWQvlspcksrsgqVSVAVKCLKPDVlsq 43   

                   ...keeFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEy
                   ++ + +F+rE + M++l  +H N+++L+Gv+++        +P+ +v+E+
     fh12337    44 peaMDDFIREVNAMHSL--DHRNLIRLYGVVLT--------PPMKMVTEL 83   

                   megGdLldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARN
                   +++G+Lld+Lrk+++++ l +L  +A+Q+A+GM YLesk+f+HRDLAARN
     fh12337    84 APLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARN 133  

                   cLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm
                    L++ +  vKI+DFGL+R+l         +d Y++++  ++k  +P  W+
     fh12337   134 LLLATRDLVKIGDFGLMRALPQN------DDHYVMQE--HRK--VPFAWC 173  

                   APEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevley
                   APEslk+++F+++SD W+FGV+LWE+ft+G++P+ g     ++ +++l++
     fh12337   174 APESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG-----LNGSQILHK 218  

                   l.kkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselver
                   ++k+G+Rlp+Pe+        CP+++Y++M qCWa++PedRPtF +l+++
     fh12337   219 IdKEGERLPRPED--------CPQDIYNVMVQCWAHKPEDRPTFVALRDF 260  

                   l<-*
                   l   
     fh12337   261 L    261  

SM00220: domain 1 of 1, from 16 to 261: score 126.9, E = 2.2e-33
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +++l +           ++ ++ +  vA+K++k++  ++++  ++++
     fh12337    16    WQVLSP-----------CKSRSGQVSVAVKCLKpdvlsqpeamDDFI 51   

                   rEikiLkk.dHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrr
                   rE++ +++ dH N+++Ly+v  +  + +V+E+++   G+L+d+l+k++++
     fh12337    52 REVNAMHSlDHRNLIRLYGVVLTPPMKMVTELAPL--GSLLDRLRKHQGH 99   

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        +  ++  +y+ Q+++++ YL s+++iHRDL   N+LL +++ vK+
     fh12337   100 -----FLLgTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATrdLVKI 144  

                   aDFGlArql..........ttfvGTpeYmAPEvl...gYgkpavDiWSlG
                   +DFGl r l++++++   + +  +   ++APE l+++ +++ a+D W +G
     fh12337   145 GDFGLMRALpqnddhyvmqEHRKVPFAWCAPESLktrTFSH-ASDTWMFG 193  

                   cilyEllt.GkpPFp..qldlifkkig............SpeakdLikkl
                   ++l+E++t G+ P+ + +  +i++ki +++++ +++++ +++  + + ++
     fh12337   194 VTLWEMFTyGQEPWIglNGSQILHKIDkegerlprpedcPQDIYNVMVQC 243  

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   +   Pe+R+t   +           f+   
     fh12337   244 WAHKPEDRPTFvALRD---------FL    261  

SM00326: domain 1 of 1, from 267 to 323: score 40.3, E = 2.5e-07
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                        ++Al D+e   +d L ++ +D+itv+e   ++ Ww+G++ rt  +
     fh12337   267    TDMRALQDFEE--PDKLHIQMNDVITVIEGRaENYWWRGQNTRTLCV 311  

                   GlfPsnYVeeie<-*
                   G fP n V+ +    
     fh12337   312 GPFPRNVVTSVA    323  

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