hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-16042825/chunk_1/iprscan-20080809-16042825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh12505 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 503.3 2.6e-148 15 PF00023.20.fs Ankyrin repeat 477.4 1.6e-140 17 PF00644.10.fs Poly(ADP-ribose) polymerase catalytic domain 70.6 1.2e-19 1 PF07647.7.fs SAM domain (Sterile alpha motif) 65.3 1.7e-18 1 PF00644.10.ls Poly(ADP-ribose) polymerase catalytic domain 71.4 2.7e-18 1 PF07647.7.ls SAM domain (Sterile alpha motif) 67.2 4.9e-17 1 PF00536.20.fs SAM domain (Sterile alpha motif) 49.6 5.6e-14 1 PF00536.20.ls SAM domain (Sterile alpha motif) 51.6 2.4e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/17 1 8 [. 26 33 .] 1.9 16 PF00023.20.fs 2/17 9 41 .. 1 33 [] 38.0 1.3e-09 PF00023.20.ls 1/15 9 41 .. 1 33 [] 40.0 7.4e-09 PF00023.20.ls 2/15 96 128 .. 1 33 [] 45.1 2.3e-10 PF00023.20.fs 3/17 96 128 .. 1 33 [] 43.1 5e-11 PF00023.20.ls 3/15 129 161 .. 1 33 [] 37.2 5.1e-08 PF00023.20.fs 4/17 129 161 .. 1 33 [] 35.2 7.6e-09 PF00023.20.ls 4/15 162 194 .. 1 33 [] 41.4 2.8e-09 PF00023.20.fs 5/17 162 194 .. 1 33 [] 39.4 5.3e-10 PF00023.20.ls 5/15 249 284 .. 1 33 [] 29.1 1.4e-05 PF00023.20.fs 6/17 249 284 .. 1 33 [] 27.1 1.4e-06 PF00023.20.ls 6/15 285 317 .. 1 33 [] 33.0 9.8e-07 PF00023.20.fs 7/17 285 317 .. 1 33 [] 31.0 1.2e-07 PF00023.20.fs 8/17 318 350 .. 1 33 [] 30.9 1.2e-07 PF00023.20.ls 7/15 318 350 .. 1 33 [] 32.9 1e-06 PF00023.20.ls 8/15 377 408 .. 1 33 [] 2.6 12 PF00023.20.fs 9/17 382 408 .. 6 33 .] 1.5 20 PF00023.20.ls 9/15 411 443 .. 1 33 [] 42.3 1.6e-09 PF00023.20.fs 10/17 411 443 .. 1 33 [] 40.3 3e-10 PF00023.20.ls 10/15 444 476 .. 1 33 [] 36.7 7.2e-08 PF00023.20.fs 11/17 444 476 .. 1 33 [] 34.8 1e-08 PF00023.20.ls 11/15 477 509 .. 1 33 [] 40.5 5.2e-09 PF00023.20.fs 12/17 477 509 .. 1 33 [] 38.5 9.2e-10 PF00023.20.fs 13/17 510 541 .. 1 33 [] 3.8 4.5 PF00023.20.ls 12/15 510 541 .. 1 33 [] 5.8 4.3 PF00023.20.ls 13/15 564 596 .. 1 33 [] 51.4 2.9e-12 PF00023.20.fs 14/17 564 596 .. 1 33 [] 49.4 8.8e-13 PF00023.20.fs 15/17 597 629 .. 1 33 [] 29.5 3e-07 PF00023.20.ls 14/15 597 629 .. 1 33 [] 31.5 2.7e-06 PF00023.20.ls 15/15 630 662 .. 1 33 [] 33.7 5.9e-07 PF00023.20.fs 16/17 630 662 .. 1 33 [] 31.7 7.3e-08 PF00023.20.fs 17/17 663 671 .. 1 9 [. 1.3 22 PF00536.20.fs 1/1 752 815 .. 1 65 [] 49.6 5.6e-14 PF07647.7.fs 1/1 752 817 .. 1 72 [] 65.3 1.7e-18 PF00536.20.ls 1/1 752 815 .. 1 65 [] 51.6 2.4e-12 PF07647.7.ls 1/1 752 817 .. 1 72 [] 67.2 4.9e-17 PF00644.10.ls 1/1 833 1038 .. 1 241 [] 71.4 2.7e-18 PF00644.10.fs 1/1 872 1038 .. 37 241 .] 70.6 1.2e-19 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 17, from 1 to 8: score 1.9, E = 16 *->Adlnaqdd<-* Ad+na+d+ fh12505 1 ADPNARDN 8 PF00023.20.fs: domain 2 of 17, from 9 to 41: score 38.0, E = 1.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLH Aa++g ++v+ Ll++GAd+n+++ fh12505 9 WNYTPLHEAAIKGKIDVCIVLLQHGADPNIRNT 41 PF00023.20.ls: domain 1 of 15, from 9 to 41: score 40.0, E = 7.4e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLH Aa++g ++v+ Ll++GAd+n+++ fh12505 9 WNYTPLHEAAIKGKIDVCIVLLQHGADPNIRNT 41 PF00023.20.ls: domain 2 of 15, from 96 to 128: score 45.1, E = 2.3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa ++++++v+lLl++GAd++a+d+ fh12505 96 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 128 PF00023.20.fs: domain 3 of 17, from 96 to 128: score 43.1, E = 5e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa ++++++v+lLl++GAd++a+d+ fh12505 96 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 128 PF00023.20.ls: domain 3 of 15, from 129 to 161: score 37.2, E = 5.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PLH A+++g++ev +lLl++GA++na d fh12505 129 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 161 PF00023.20.fs: domain 4 of 17, from 129 to 161: score 35.2, E = 7.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PLH A+++g++ev +lLl++GA++na d fh12505 129 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 161 PF00023.20.ls: domain 4 of 15, from 162 to 194: score 41.4, E = 2.8e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* fTPLH Aa+++++ev++lLls+GAd+ +++ fh12505 162 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 194 PF00023.20.fs: domain 5 of 17, from 162 to 194: score 39.4, E = 5.3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* fTPLH Aa+++++ev++lLls+GAd+ +++ fh12505 162 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 194 PF00023.20.ls: domain 5 of 15, from 249 to 284: score 29.1, E = 1.4e-05 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* +T+LH+A+ + ++++++v +lLl +GA++n +++ fh12505 249 SHETALHCAVASLhpkRKQVTELLLRKGANVNEKNK 284 PF00023.20.fs: domain 6 of 17, from 249 to 284: score 27.1, E = 1.4e-06 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* +T+LH+A+ + ++++++v +lLl +GA++n +++ fh12505 249 SHETALHCAVASLhpkRKQVTELLLRKGANVNEKNK 284 PF00023.20.ls: domain 6 of 15, from 285 to 317: score 33.0, E = 9.8e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPLH+Aa+r + +v++ L ++GA na d fh12505 285 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDT 317 PF00023.20.fs: domain 7 of 17, from 285 to 317: score 31.0, E = 1.2e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +TPLH+Aa+r + +v++ L ++GA na d fh12505 285 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDT 317 PF00023.20.fs: domain 8 of 17, from 318 to 350: score 30.9, E = 1.2e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH Aal g+l+ ++lLls+G d+ + fh12505 318 LGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 350 PF00023.20.ls: domain 7 of 15, from 318 to 350: score 32.9, E = 1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH Aal g+l+ ++lLls+G d+ + fh12505 318 LGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 350 PF00023.20.ls: domain 8 of 15, from 377 to 408: score 2.6, E = 12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d + L A++ g+le vk L s ++n +d fh12505 377 DVDYRLLEASKAGDLETVKQLCS-SQNVNCRDL 408 PF00023.20.fs: domain 9 of 17, from 382 to 408: score 1.5, E = 20 *->LHlAalrgnlevvklLlsqGAdlnaqdd<-* L A++ g+le vk L s ++n +d fh12505 382 LLEASKAGDLETVKQLCS-SQNVNCRDL 408 PF00023.20.ls: domain 9 of 15, from 411 to 443: score 42.3, E = 1.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLH Aa +++++vv++Ll +GAd++a+d+ fh12505 411 RHSTPLHFAAGYNRVSVVEYLLHHGADVHAKDK 443 PF00023.20.fs: domain 10 of 17, from 411 to 443: score 40.3, E = 3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLH Aa +++++vv++Ll +GAd++a+d+ fh12505 411 RHSTPLHFAAGYNRVSVVEYLLHHGADVHAKDK 443 PF00023.20.ls: domain 10 of 15, from 444 to 476: score 36.7, E = 7.2e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PLH A+++g++ev++lL+ +GA++n+ d fh12505 444 GGLVPLHNACSYGHYEVAELLVRHGASVNVADL 476 PF00023.20.fs: domain 11 of 17, from 444 to 476: score 34.8, E = 1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PLH A+++g++ev++lL+ +GA++n+ d fh12505 444 GGLVPLHNACSYGHYEVAELLVRHGASVNVADL 476 PF00023.20.ls: domain 11 of 15, from 477 to 509: score 40.5, E = 5.2e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* fTPLH Aa +g +e++klLl++GAd+ +++ fh12505 477 WKFTPLHEAAAKGKYEICKLLLKHGADPTKKNR 509 PF00023.20.fs: domain 12 of 17, from 477 to 509: score 38.5, E = 9.2e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* fTPLH Aa +g +e++klLl++GAd+ +++ fh12505 477 WKFTPLHEAAAKGKYEICKLLLKHGADPTKKNR 509 PF00023.20.fs: domain 13 of 17, from 510 to 541: score 3.8, E = 4.5 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL l ++ g++++ lL + A l+a + fh12505 510 DGNTPLDL-VKEGDTDIQDLLRGDAALLDAAKK 541 PF00023.20.ls: domain 12 of 15, from 510 to 541: score 5.8, E = 4.3 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL l ++ g++++ lL + A l+a + fh12505 510 DGNTPLDL-VKEGDTDIQDLLRGDAALLDAAKK 541 PF00023.20.ls: domain 13 of 15, from 564 to 596: score 51.4, E = 2.9e-12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa ++nlev+++Ll++GAd+naqd+ fh12505 564 RNSTPLHLAAGYNNLEVAEYLLEHGADVNAQDK 596 PF00023.20.fs: domain 14 of 17, from 564 to 596: score 49.4, E = 8.8e-13 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa ++nlev+++Ll++GAd+naqd+ fh12505 564 RNSTPLHLAAGYNNLEVAEYLLEHGADVNAQDK 596 PF00023.20.fs: domain 15 of 17, from 597 to 629: score 29.5, E = 3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PLH Aa++g+++++ lL+++ ++na+d+ fh12505 597 GGLIPLHNAASYGHVDIAALLIKYNTCVNATDK 629 PF00023.20.ls: domain 14 of 15, from 597 to 629: score 31.5, E = 2.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PLH Aa++g+++++ lL+++ ++na+d+ fh12505 597 GGLIPLHNAASYGHVDIAALLIKYNTCVNATDK 629 PF00023.20.ls: domain 15 of 15, from 630 to 662: score 33.7, E = 5.9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* fTPLH Aa++g+++++ lLl +GAd+ +++ fh12505 630 WAFTPLHEAAQKGRTQLCALLLAHGADPTMKNQ 662 PF00023.20.fs: domain 16 of 17, from 630 to 662: score 31.7, E = 7.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* fTPLH Aa++g+++++ lLl +GAd+ +++ fh12505 630 WAFTPLHEAAQKGRTQLCALLLAHGADPTMKNQ 662 PF00023.20.fs: domain 17 of 17, from 663 to 671: score 1.3, E = 22 *->dGfTPLHlA<-* +G+TPL lA fh12505 663 EGQTPLDLA 671 PF00536.20.fs: domain 1 of 1, from 752 to 815: score 49.6, E = 5.6e-14 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG ++ ++++L+s+gl++ +d F + + i++d l+ + e+L+++G fh12505 752 VAGLDMNISQFLKSLGLEHLRDIF-ETEQITLDVLADMGHEELKEIG 797 vtllGHrkKIlssIqgLk<-* ++ GHr+K+ + +++L fh12505 798 INAYGHRHKLIKGVERLL 815 PF07647.7.fs: domain 1 of 1, from 752 to 817: score 65.3, E = 1.7e-18 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v ++ +++++L+s+gl ++ +d+F+ +it ++l + + +e+L fh12505 752 VAGLDM-NISQFLKSLGL-EHLRDIFETEQITL-DVL-ADMGHEEL- 793 klalGitsvghRkkilkkiqelkqq<-* k ++Gi+++ghR+k++k++++l++ fh12505 794 K-EIGINAYGHRHKLIKGVERLLGG 817 PF00536.20.ls: domain 1 of 1, from 752 to 815: score 51.6, E = 2.4e-12 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG ++ ++++L+s+gl++ +d F + + i++d l+ + e+L+++G fh12505 752 VAGLDMNISQFLKSLGLEHLRDIF-ETEQITLDVLADMGHEELKEIG 797 vtllGHrkKIlssIqgLk<-* ++ GHr+K+ + +++L fh12505 798 INAYGHRHKLIKGVERLL 815 PF07647.7.ls: domain 1 of 1, from 752 to 817: score 67.2, E = 4.9e-17 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa v ++ +++++L+s+gl ++ +d+F+ +it ++l + + +e+L fh12505 752 VAGLDM-NISQFLKSLGL-EHLRDIFETEQITL-DVL-ADMGHEEL- 793 klalGitsvghRkkilkkiqelkqq<-* k ++Gi+++ghR+k++k++++l++ fh12505 794 K-EIGINAYGHRHKLIKGVERLLGG 817 PF00644.10.ls: domain 1 of 1, from 833 to 1038: score 71.4, E = 2.7e-18 *->LkckklepLdkdSeEykmiekylknThapthggy.e......Yslti ++ l L+++ +Ey+ +e ++++T h+ ++++ ++ ++ + fh12505 833 -GT-ILLDLAPEDKEYQSVEEEMQSTIR-EHR-DgGnaggifNRYNV 875 vdIfrvqrdgEadrFqphkkqlekkkglkNvnrrLLWHGSrltNfagILs ++I++v ++ + +rF+ k + + ++ n+r+L+HGS ++ +I++ fh12505 876 IRIQKVVNKKLRERFCHRQKEVSEENHNHH-NERMLFHGSP--FINAIIH 922 qGLrIappeaPvtGymTDGFGKGiYFAdmaSkSaDnYcptsea...ngsg +G+ + ++a + G m FG GiYFA +SkS +Y + +++++++++ fh12505 923 KGF--DERHAYI-GGM---FGAGIYFAENSSKSN-QYVYGIGGgtgCPTH 965 l.rSl....lgmlLseVALGdemneLtkadysaeklppgkhSvkGlGktt +rS + ml ++V LG+ L ++ ++ +ppg+hSv+G fh12505 966 KdRSCyichRQMLFCRVTLGK--SFLQFSTMKMAHAPPGHHSVIG----- 1008 PawkdpsesfvdlDGvvvPlgklvptgykssvdytllynEYvVYdveQvr + P+ + l y EYv+Y eQ++ fh12505 1009 R-----------------PSVNG------------LAYAEYVIYRGEQAY 1029 lkYLlevkf<-* ++YL+++ fh12505 1030 PEYLITYQI 1038 PF00644.10.fs: domain 1 of 1, from 872 to 1038: score 70.6, E = 1.2e-19 *->sltivdIfrvqrdgEadrFqphkkqlekkkglkNvnrrLLWHGSrlt ++ +++I++v ++ + +rF+ k + + ++ n+r+L+HGS fh12505 872 RYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHH-NERMLFHGSP-- 915 NfagILsqGLrIappeaPvtGymTDGFGKGiYFAdmaSkSaDnYcptsea ++ +I+++G+ + ++a + G m FG GiYFA +SkS +Y + ++ fh12505 916 FINAIIHKGF--DERHAYI-GGM---FGAGIYFAENSSKSN-QYVYGIGG 958 ...ngsgl.rSl....lgmlLseVALGdemneLtkadysaeklppgkhSv +++++++ +rS + ml ++V LG+ L ++ ++ +ppg+hSv fh12505 959 gtgCPTHKdRSCyichRQMLFCRVTLGK--SFLQFSTMKMAHAPPGHHSV 1006 kGlGkttPawkdpsesfvdlDGvvvPlgklvptgykssvdytllynEYvV +G + P+ + l y EYv+ fh12505 1007 IG-----R-----------------PSVNG------------LAYAEYVI 1022 YdveQvrlkYLlevkf<-* Y eQ++++YL+++ fh12505 1023 YRGEQAYPEYLITYQI 1038 //