hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-16042825/chunk_1/iprscan-20080809-16042825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh12505 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 399.5 1.9e-115 15 SM00454 57.4 1.8e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/15 9 38 .. 1 30 [] 32.5 5.8e-05 SM00248 2/15 62 90 .. 1 30 [] 0.0 4.7e+03 SM00248 3/15 96 125 .. 1 30 [] 34.6 1.4e-05 SM00248 4/15 129 158 .. 1 30 [] 29.5 0.00046 SM00248 5/15 162 191 .. 1 30 [] 29.9 0.00035 SM00248 6/15 249 281 .. 1 30 [] 24.4 0.015 SM00248 7/15 285 314 .. 1 30 [] 30.3 0.00026 SM00248 8/15 318 347 .. 1 30 [] 28.8 0.00074 SM00248 9/15 377 405 .. 1 30 [] 4.9 1e+03 SM00248 10/15 411 440 .. 1 30 [] 32.2 7.3e-05 SM00248 11/15 444 473 .. 1 30 [] 32.9 4.3e-05 SM00248 12/15 477 506 .. 1 30 [] 33.5 2.8e-05 SM00248 13/15 564 593 .. 1 30 [] 40.3 2.7e-07 SM00248 14/15 597 626 .. 1 30 [] 23.1 0.039 SM00248 15/15 630 659 .. 1 30 [] 22.6 0.056 SM00454 1/1 752 817 .. 1 67 [] 57.4 1.8e-12 Alignments of top-scoring domains: SM00248: domain 1 of 15, from 9 to 38: score 32.5, E = 5.8e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* ++TpLH Aa +g ++v+ Ll++gad+n+ fh12505 9 WNYTPLHEAAIKGKIDVCIVLLQHGADPNI 38 SM00248: domain 2 of 15, from 62 to 90: score 0.0, E = 4.7e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* + + L Aa++gn+e + +Ll ++n+ fh12505 62 YKKDELLEAARSGNEEKLMALLTPL-NVNC 90 SM00248: domain 3 of 15, from 96 to 125: score 34.6, E = 1.4e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* TpLHlAa ++++ +v+lLl++gad++a fh12505 96 RKSTPLHLAAGYNRVRIVQLLLQHGADVHA 125 SM00248: domain 4 of 15, from 129 to 158: score 29.5, E = 0.00046 *->dGrTpLHlAaengnlevvklLldkgadina<-* G pLH A+++g++ev +lLl++ga +na fh12505 129 GGLVPLHNACSYGHYEVTELLLKHGACVNA 158 SM00248: domain 5 of 15, from 162 to 191: score 29.9, E = 0.00035 *->dGrTpLHlAaengnlevvklLldkgadina<-* +TpLH Aa+++++ev+ lLl++gad+++ fh12505 162 WQFTPLHEAASKNRVEVCSLLLSHGADPTL 191 SM00248: domain 6 of 15, from 249 to 281: score 24.4, E = 0.015 *->dGrTpLHlAaen...gnlevvklLldkgadina<-* T+LH+A+++ +++++ v +lLl+kga++n+ fh12505 249 SHETALHCAVASlhpKRKQVTELLLRKGANVNE 281 SM00248: domain 7 of 15, from 285 to 314: score 30.3, E = 0.00026 *->dGrTpLHlAaengnlevvklLldkgadina<-* d +TpLH+Aae+ + +v++ L ++ga +na fh12505 285 DFMTPLHVAAERAHNDVMEVLHKHGAKMNA 314 SM00248: domain 8 of 15, from 318 to 347: score 28.8, E = 0.00074 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T+LH Aa g+l +++lLl++g d+ + fh12505 318 LGQTALHRAALAGHLQTCRLLLSYGSDPSI 347 SM00248: domain 9 of 15, from 377 to 405: score 4.9, E = 1e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* d + L A + g+le+vk L ++ ++n+ fh12505 377 DVDYRLLEASKAGDLETVKQLCSSQ-NVNC 405 SM00248: domain 10 of 15, from 411 to 440: score 32.2, E = 7.3e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* TpLH Aa +++++vv++Ll +gad++a fh12505 411 RHSTPLHFAAGYNRVSVVEYLLHHGADVHA 440 SM00248: domain 11 of 15, from 444 to 473: score 32.9, E = 4.3e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G pLH A+++g++ev++lL+++ga++n+ fh12505 444 GGLVPLHNACSYGHYEVAELLVRHGASVNV 473 SM00248: domain 12 of 15, from 477 to 506: score 33.5, E = 2.8e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +TpLH Aa++g +e++klLl++gad+++ fh12505 477 WKFTPLHEAAAKGKYEICKLLLKHGADPTK 506 SM00248: domain 13 of 15, from 564 to 593: score 40.3, E = 2.7e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* + TpLHlAa ++nlev+++Ll++gad+na fh12505 564 RNSTPLHLAAGYNNLEVAEYLLEHGADVNA 593 SM00248: domain 14 of 15, from 597 to 626: score 23.1, E = 0.039 *->dGrTpLHlAaengnlevvklLldkgadina<-* G pLH Aa++g+++++ lL++++ +na fh12505 597 GGLIPLHNAASYGHVDIAALLIKYNTCVNA 626 SM00248: domain 15 of 15, from 630 to 659: score 22.6, E = 0.056 *->dGrTpLHlAaengnlevvklLldkgadina<-* +TpLH Aa++g+ ++ lLl +gad+++ fh12505 630 WAFTPLHEAAQKGRTQLCALLLAHGADPTM 659 SM00454: domain 1 of 1, from 752 to 817: score 57.4, E = 1.8e-12 *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel v + +++ ++++L+s+gle+ +d+F++++i+ + l+ + +e Lke+ fh12505 752 VAgLDMN-ISQFLKSLGLEHLRDIFETEQITLDVLADMG-HEELKEI 796 GitllGhRkkIlsaiqklkeq<-* Gi+++GhR+k++++++ l+ fh12505 797 GINAYGHRHKLIKGVERLLGG 817 //