hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-16301777/chunk_1/iprscan-20080809-16301777.nocrc
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Query sequence: fh12735
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.fs RUN domain                                     148.0      3e-42   4
PF02759.9.ls RUN domain                                     138.8    1.4e-38   1
PF03455.9.ls dDENN domain                                   107.7    3.2e-29   1
PF03455.9.fs dDENN domain                                   105.7    4.4e-29   1
PF01477.13.fs PLAT/LH2 domain                                 34.8    6.9e-10   1
PF01477.13.ls PLAT/LH2 domain                                 36.6      8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03455.9.fs   1/1     103   179 ..     1    81 []   105.7  4.4e-29
PF03455.9.ls   1/1     103   179 ..     1    81 []   107.7  3.2e-29
PF02759.9.fs   2/4     399   533 ..     1   174 []   137.0  4.5e-39
PF02759.9.ls   1/1     399   533 ..     1   174 []   138.8  1.4e-38
PF01477.13.fs   1/1     544   646 ..     1   130 []    34.8  6.9e-10
PF01477.13.ls   1/1     544   646 ..     1   130 []    36.6    8e-08

Alignments of top-scoring domains:
PF03455.9.fs: domain 1 of 1, from 103 to 179: score 105.7, E = 4.4e-29
                   *->lddqvreaFLrfFNasllggYrnfLryprkape.wegardevvtFqk
                      l++q+re+F ++F  +++++Y+ f++++ ++ e+w ++r+++++F+k
     fh12735   103    LNVQLREVFANRF-TQMFADYEAFVIQTAQDMEsWLTNREQMQNFDK 148  

                   eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   ++FL+++p+ ++ +Flsr+ etQ   mFa+FI+++   
     fh12735   149 ASFLSDQPEPYL-PFLSRFIETQ---MFATFIDNK    179  

PF03455.9.ls: domain 1 of 1, from 103 to 179: score 107.7, E = 3.2e-29
                   *->lddqvreaFLrfFNasllggYrnfLryprkape.wegardevvtFqk
                      l++q+re+F ++F  +++++Y+ f++++ ++ e+w ++r+++++F+k
     fh12735   103    LNVQLREVFANRF-TQMFADYEAFVIQTAQDMEsWLTNREQMQNFDK 148  

                   eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   ++FL+++p+ ++ +Flsr+ etQ   mFa+FI+++   
     fh12735   149 ASFLSDQPEPYL-PFLSRFIETQ---MFATFIDNK    179  

PF02759.9.fs: domain 2 of 4, from 399 to 533: score 137.0, E = 4.5e-39
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      + +++++Al+sH+++                      +e +   + +
     fh12735   399    QVKQGKSALWSHLIQ-------------------FQDREEKQEHLAE 426  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   s++       ++  ++ ++d  +  ++++ sl +++++i+++ e     i
     fh12735   427 SPV-----ALGP--ERRKSDSGVMLPTLRVSLIQDMRHIQNMSE-----I 464  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt+vgr R  AWiRl+L++k+Ls++lk+Lls++ l++k+Yk++A+Lr++ 
     fh12735   465 KTDVGRAR--AWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCE- 511  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    ee+ e++l++L +L+a+d++   +f+   
     fh12735   512 -EER-EQFLYHLLSLNAVDYF---CFT    533  

PF02759.9.ls: domain 1 of 1, from 399 to 533: score 138.8, E = 1.4e-38
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      + +++++Al+sH+++                      +e +   + +
     fh12735   399    QVKQGKSALWSHLIQ-------------------FQDREEKQEHLAE 426  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   s++       ++  ++ ++d  +  ++++ sl +++++i+++ e     i
     fh12735   427 SPV-----ALGP--ERRKSDSGVMLPTLRVSLIQDMRHIQNMSE-----I 464  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt+vgr R  AWiRl+L++k+Ls++lk+Lls++ l++k+Yk++A+Lr++ 
     fh12735   465 KTDVGRAR--AWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCE- 511  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    ee+ e++l++L +L+a+d++   +f+   
     fh12735   512 -EER-EQFLYHLLSLNAVDYF---CFT    533  

PF01477.13.fs: domain 1 of 1, from 544 to 646: score 34.8, E = 6.9e-10
                   *->vsyqlivatggdstgagttgkvgislyGengeseqipldkgelkslp
                       s+ + ++ ++    a  t++ +i+  Ge g++        ++    
     fh12735   544    RSVIIPIKKLS---NAIITSNPWICVSGELGDT--------GV---- 575  

                   tlgagpgstfsftfdvdedlGelgavkiknehsglnswsptspewflksi
                     ++ p +  ++tf++ ++lG l  v+i +++sgl +      +w +  +
     fh12735   576 --MQIPKNLLEMTFEC-QNLGKLTTVQIGHDNSGLLA------KWLVDCV 616  

                   tvedgptqgkvhFpCnsWvypakgdeylslrif<-*
                   +v++  t++++ FpC +W+ +    ++ sl+     
     fh12735   617 MVRNEITGHTYRFPCGRWLGKG--IDDGSLE-R    646  

PF01477.13.ls: domain 1 of 1, from 544 to 646: score 36.6, E = 8e-08
                   *->vsyqlivatggdstgagttgkvgislyGengeseqipldkgelkslp
                       s+ + ++ ++    a  t++ +i+  Ge g++        ++    
     fh12735   544    RSVIIPIKKLS---NAIITSNPWICVSGELGDT--------GV---- 575  

                   tlgagpgstfsftfdvdedlGelgavkiknehsglnswsptspewflksi
                     ++ p +  ++tf++ ++lG l  v+i +++sgl +      +w +  +
     fh12735   576 --MQIPKNLLEMTFEC-QNLGKLTTVQIGHDNSGLLA------KWLVDCV 616  

                   tvedgptqgkvhFpCnsWvypakgdeylslrif<-*
                   +v++  t++++ FpC +W+ +    ++ sl+     
     fh12735   617 MVRNEITGHTYRFPCGRWLGKG--IDDGSLE-R    646  

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