hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-16301777/chunk_1/iprscan-20080809-16301777.nocrc
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Query sequence: fh12735
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00593                                                 139.0      5e-37   2
SM00801                                                  95.4    6.7e-24   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00801     1/1     103   179 ..     1    84 []    95.4  6.7e-24
SM00593     1/2     471   534 ..     1    68 []    90.5    2e-22
SM00593     2/2     810   870 ..     1    68 []    48.5  8.7e-10

Alignments of top-scoring domains:
SM00801: domain 1 of 1, from 103 to 179: score 95.4, E = 6.7e-24
                   *->lndeireaaFlrffnsaqllggllYrnflrkhpitdaptwrkepgpv
                      ln+++re +F ++f  +q++ +  Y+ f++ ++++d+++w +++++ 
     fh12735   103    LNVQLRE-VFANRF--TQMFAD--YEAFVI-QTAQDMESWLTNREQM 143  

                   isFdkesFlksrpsselrpFlkkfletQmFsqFIeer<-*
                     Fdk+sFl+++p+ +  pFl++f+etQmF++FI+++   
     fh12735   144 QNFDKASFLSDQPEPY-LPFLSRFIETQMFATFIDNK    179  

SM00593: domain 1 of 2, from 471 to 534: score 90.5, E = 2e-22
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                      +rAwirl+L++klLs++L+ Lls+++l++k+Y+++Aflr+    +ee
     fh12735   471    ARAWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRC----EEE 513  

                   geqlltlLqgLsaldfnlpvd<-*
                    eq+l++L++L+a+d++++++   
     fh12735   514 REQFLYHLLSLNAVDYFCFTS    534  

SM00593: domain 2 of 2, from 810 to 870: score 48.5, E = 8.7e-10
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                      f+++++l+ ++ lL++w+ +Ll++++++ ++Ye+ A+lr+    +  
     fh12735   810    FQILVCLGTRDRLLPQWI-PLLAECPAITRMYEESALLRD----RMT 851  

                   geqlltlLqgLsaldfnlpvd<-*
                    ++l+++Lq+    df++ ++   
     fh12735   852 VNSLIRILQTI--QDFTIVLE    870  

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