hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-16443263/chunk_1/iprscan-20080809-16443263.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh12850 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03154.6.fs Atrophin-1 family 819.6 1.5e-243 1 PF03154.6.ls Atrophin-1 family 504.7 1e-148 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03154.6.ls 1/1 2 774 .] 1 1111 [] 504.7 1e-148 PF03154.6.fs 1/1 20 774 .] 337 1111 .] 819.6 1.5e-243 Alignments of top-scoring domains: PF03154.6.ls: domain 1 of 1, from 2 to 774: score 504.7, E = 1e-148 *->gKHsMRTRRsRgslStLRSGrkkqtaSPdgrtspsnedlrssGrsSp fh12850 - ----------------------------------------------- - SaaStsstDsKaEsvkKsaKveqKiKEEasSPlKsaKRqREkvAsdteEp fh12850 - -------------------------------------------------- - ervsaKkaKTQvrGGvlhelsrPdsPSeGeGeGEGEgEveeesSSdsRSv l P fh12850 2 ------------------FLIHPLV-V----------------------- 9 neegSSDpKDIDQDNRSsSPSIPSPqdGNESDSDSSAqqlqqlqQqqllq A lqQ+ fh12850 10 ------------------------------------A-----LQQP---- 14 sqppplaaalaetpAsssaPPgttQlPtiaaqPaPSAtsvpPqqSPtaas p p+ +l+ p PP+++ + a S + fh12850 15 --PLPVLPPLPLPP-----PPPPPYGRLLA-------------NSNAHPG 44 advPqqplaqsapvvassiqaasalHpqqrpPvlsalsphsplsPvslfP + P+ +aqs + ++ + H qq + + fh12850 45 P-FPPSTGAQSTA--HPPVSTHHHHHQQQQQQ-----QQQQQQ---QQQQ 83 PslpltGSAQPsaPsvaqPsLPsPhHGqgpPsPHsLQaGPPllqhPhsqp + G P ++P PH+L G + hP+++ fh12850 84 QQQH-HGNSGP-----PPPGA----------FPHPLEGGSSHHAHPYAMS 117 PqnFsllaQasvgqlPlgtssaarshayPhtslqlPaSQSAlqsqQPPRe P s fh12850 118 PSLGS--------------------------------------------L 123 qpLPpAPlamPHGsqIKPPPTTPIpQLaaPqsHKhppHlssPspfPqMps p Pp P H PPP ++ + +P+ + +s fh12850 124 RPYPPGPA---H----LPPPHSQVS-------YSQAGP-NGPPVSSSSNS 158 NLPPPPALKPLsSLpthHPPsAhPPPLqLMPQsQpLpassaQPpvlTQSQ sS + P hP P q PQ+ p p +++ P+v T S fh12850 159 S----------SSTSQGSYPCSHPSPSQ-GPQGAPYPFPPV-PTVTTSSA 196 sLP.vispvasHPgkG.lhqvasapPlasHPlvpsaasaisplPslppq. L +vi+ vas P ++ +++ pP+ + p+a ++p P p + fh12850 197 TLStVIATVASSPAGYkTASPPGPPPYGKRAPSPGAYKTATP-PGYKPGs 245 .PsFaTstfpAGvlta..AqP....PpSsaaasaGvppPsssassssism +PsF T t+p +t+++A+P++ +P S + pp ++s+ s+ fh12850 246 pPSFRTGTPPGYRGTSppAGPgtfkPGSPTVGPGPLPP---AGPSGLPSL 292 PlPasvGcsGPtaelpqiqIKEEpLDeaEEpESPPPPpRSPSPEPTVVnt P P + s +++l+ qIK Ep e E pESP PP RSPSP P VV+ fh12850 293 PPPPAAPAS--GPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDV 340 psHASQSARFyKHLDRGYNSCARtDLyFtPLasSKLAkKREEAvEKakRE psHASQSARF KHLDRG+NSCAR DLyF PL +SKLAkKR vEK +RE fh12850 341 PSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRRE 390 AEQKAREEkEREkErEkErERERERErEAeRaAvsslslslslfflfscl AEQ+AREEkERE+ErE+E+ERERE ErE eR fh12850 391 AEQRAREEKEREREREREKEREREKERELERSV----------------- 423 PnhcfcPPPsqkaaSSSsHesr..msepqLaGPahmRpsFeqPPTTiAAV k + e+r + p+L GP Rp+Fe P +A V fh12850 424 -----------KL----AQEGRapVECPSL-GPVPHRPPFE-PGSAVATV 456 pPYIGPDTPALRTLSeYARPHvMSPTNRNHPFYvsLnPaDP.LLAYHMPG pPY GPDTPALRTLSeYARPHvMSP NRNHPFYv+L+ DP+LL Y P fh12850 457 PPYLGPDTPALRTLSEYARPHVMSPGNRNHPFYVPLGAVDPgLLGYNVPA 506 LYnadPslRERELREREiREReiRERELRERMKPGFEVKPPeLdaLHPsa LY dP+ RERE Re RER LR R+KPGFEVKP eL++LH fh12850 507 LYSSDPAARERE--------REARERDLRDRLKPGFEVKPSELEPLHGVP 548 NP.MEHFARHgAitlPpiPagPHpFAsfHPGLNpLERERLAL.AGPQLRP P++ F RHg ++l p P g HpF +fHP L pLERERLAL AGP LRP fh12850 549 GPgLDPFPRHGGLALQPGPPGLHPF-PFHPSLGPLERERLALaAGPALRP 597 ElsYpeRLaAERlHAERMAsvasDPlARLQMfNVTPHHHQHSHIHSHLHL +sY+eRLaAER HAER A + +DPlARLQM+NVTPHHHQHSHIHSHLHL fh12850 598 DMSYAERLAAERQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHL 647 HQQDPLHQGSssPvHPLaVDPLaaGPhLARFPyPgGaiPNPLLGqpPHEH HQQD H S+s vHPL +DPLa G hL R PyP G++PNPLL p HE fh12850 648 HQQDAIHAASAS-VHPL-IDPLASGSHLTRIPYPAGTLPNPLLPHPLHEN 695 EMLRHPvFGaayPReLqGAIPqPMSAAHQLQAMHAQSAELqrLamE.QQW E LRH +F a+y R+L+ + PMSAAHQLQAMHAQSAELqrLa+E+QQW fh12850 696 EVLRHQLFAAPY-RDLPASLSAPMSAAHQLQAMHAQSAELQRLALEqQQW 744 LHGHhhlhgGpLPSQEDYYsrlikesdkql<-* LH Hh lh pLP QEDYYs l+kesdk+l fh12850 745 LHAHHPLHSVPLPAQEDYYSHLKKESDKPL 774 PF03154.6.fs: domain 1 of 1, from 20 to 774: score 819.6, E = 1.5e-243 *->PPl.lqhPhsqpPqnFs.llaQasvgqlPlgtssaarshayPhtslq PPl+l+ P pP+++++lla + + P + s a+s a P s fh12850 20 PPLpLPPP---PPPPYGrLLANSNAHPGPFPPSTGAQSTAHPPVSTH 63 lPaSQSAlqsqQPPReqpLPpAPlamPHGsqIKPPPTT.PIpQLaaPqsH Q q qQ q+ + HG PPP P p L sH fh12850 64 HHHHQQQQQQQQQQQQQQQQQQQH---HGNSGPPPPGAfPHP-LEGGSSH 109 KhppHlssPs.....pfPqMpsNLPPP..........PALKPLsSLpthH p sPs ++ +p+P p+ LPPP+++ + ++ +P P sS + fh12850 110 HAHPYAMSPSlgslrPYPPGPAHLPPPhsqvsysqagPNGPPVSSSSNSS 159 P.......PsAhPPPLqLMPQsQpLpassaQPpvlTQSQsLP.vispvas ++++++ P hP P q PQ+ p p +++ P+v T S L +vi+ vas fh12850 160 SstsqgsyPCSHPSPSQ-GPQGAPYPFPPV-PTVTTSSATLStVIATVAS 207 HPgkG.lhqvasapPlasHPlvpsaasaisplPslppq..PsFaTstfpA P ++ +++ pP+ + p+a ++p P p ++PsF T t+p fh12850 208 SPAGYkTASPPGPPPYGKRAPSPGAYKTATP-PGYKPGspPSFRTGTPPG 256 Gvlta..AqP....PpSsaaasaGvppPsssassssismPlPasvGcsGP +t+++A+P++ +P S + pp ++s+ s+P P + s fh12850 257 YRGTSppAGPgtfkPGSPTVGPGPLPP---AGPSGLPSLPPPPAAPAS-- 301 taelpqiqIKEEpLDeaEEpESPPPPpRSPSPEPTVVntpsHASQSARFy +++l+ qIK Ep e E pESP PP RSPSP P VV+ psHASQSARF fh12850 302 GPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSARFN 351 KHLDRGYNSCARtDLyFtPLasSKLAkKREEAvEKakREAEQKAREEkER KHLDRG+NSCAR DLyF PL +SKLAkKR vEK +REAEQ+AREEkER fh12850 352 KHLDRGFNSCARSDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKER 401 EkErEkErERERERErEAeRaAvsslslslslfflfsclPnhcfcPPPsq E+ErE+E+ERERE ErE eR fh12850 402 EREREREKEREREKERELERSV---------------------------- 423 kaaSSSsHesr..msepqLaGPahmRpsFeqPPTTiAAVpPYIGPDTPAL k + e+r + p+L GP Rp+Fe P +A VpPY GPDTPAL fh12850 424 KL----AQEGRapVECPSL-GPVPHRPPFE-PGSAVATVPPYLGPDTPAL 467 RTLSeYARPHvMSPTNRNHPFYvsLnPaDP.LLAYHMPGLYnadPslRER RTLSeYARPHvMSP NRNHPFYv+L+ DP+LL Y P LY dP+ RER fh12850 468 RTLSEYARPHVMSPGNRNHPFYVPLGAVDPgLLGYNVPALYSSDPAARER 517 ELREREiREReiRERELRERMKPGFEVKPPeLdaLHPsaNP.MEHFARHg E Re RER LR R+KPGFEVKP eL++LH P++ F RHg fh12850 518 E--------REARERDLRDRLKPGFEVKPSELEPLHGVPGPgLDPFPRHG 559 AitlPpiPagPHpFAsfHPGLNpLERERLAL.AGPQLRPElsYpeRLaAE ++l p P g HpF +fHP L pLERERLAL AGP LRP +sY+eRLaAE fh12850 560 GLALQPGPPGLHPF-PFHPSLGPLERERLALaAGPALRPDMSYAERLAAE 608 RlHAERMAsvasDPlARLQMfNVTPHHHQHSHIHSHLHLHQQDPLHQGSs R HAER A + +DPlARLQM+NVTPHHHQHSHIHSHLHLHQQD H S+ fh12850 609 RQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHLHQQDAIHAASA 658 sPvHPLaVDPLaaGPhLARFPyPgGaiPNPLLGqpPHEHEMLRHPvFGaa s vHPL +DPLa G hL R PyP G++PNPLL p HE E LRH +F a+ fh12850 659 S-VHPL-IDPLASGSHLTRIPYPAGTLPNPLLPHPLHENEVLRHQLFAAP 706 yPReLqGAIPqPMSAAHQLQAMHAQSAELqrLamE.QQWLHGHhhlhgGp y R+L+ + PMSAAHQLQAMHAQSAELqrLa+E+QQWLH Hh lh p fh12850 707 Y-RDLPASLSAPMSAAHQLQAMHAQSAELQRLALEqQQWLHAHHPLHSVP 755 LPSQEDYYsrlikesdkql<-* LP QEDYYs l+kesdk+l fh12850 756 LPAQEDYYSHLKKESDKPL 774 //