hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-08282030/chunk_1/iprscan-20090618-08282030.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13102 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02214.13.fs K+ channel tetramerisation domain 170.7 6.4e-51 1 PF02214.13.ls K+ channel tetramerisation domain 172.6 8.9e-49 1 PF00520.21.ls Ion transport protein 156.8 5.2e-44 1 PF00520.21.fs Ion transport protein 155.0 1.8e-43 1 PF07885.6.fs Ion channel 50.6 2.6e-14 1 PF07885.6.ls Ion channel 52.6 1.3e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02214.13.fs 1/1 14 108 .. 1 102 [] 170.7 6.4e-51 PF02214.13.ls 1/1 14 108 .. 1 102 [] 172.6 8.9e-49 PF00520.21.ls 1/1 251 439 .. 1 224 [] 156.8 5.2e-44 PF00520.21.fs 1/1 251 439 .. 1 224 [] 155.0 1.8e-43 PF07885.6.fs 1/1 355 449 .. 1 81 [] 50.6 2.6e-14 PF07885.6.ls 1/1 355 449 .. 1 81 [] 52.6 1.3e-12 Alignments of top-scoring domains: PF02214.13.fs: domain 1 of 1, from 14 to 108: score 170.7, E = 6.4e-51 *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd +++NVGG+r++T++sTL+++ P T+L +l++ d ++ +++yd+ fh13102 14 IVINVGGTRHQTYRSTLRTL-PGTRLAWLAEPD-----AHSHFDYDP 54 dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde + +E+FFDR+P++F +ILn+YRt GkLh+p +vc ++eEl+F+g+de fh13102 55 RADEFFFDRHPGVFAHILNYYRT--GKLHCPaDVCGPLYEEELAFWGIDE 102 laielC<-* ++e+C fh13102 103 TDVEPC 108 PF02214.13.ls: domain 1 of 1, from 14 to 108: score 172.6, E = 8.9e-49 *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd +++NVGG+r++T++sTL+++ P T+L +l++ d ++ +++yd+ fh13102 14 IVINVGGTRHQTYRSTLRTL-PGTRLAWLAEPD-----AHSHFDYDP 54 dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde + +E+FFDR+P++F +ILn+YRt GkLh+p +vc ++eEl+F+g+de fh13102 55 RADEFFFDRHPGVFAHILNYYRT--GKLHCPaDVCGPLYEEELAFWGIDE 102 laielC<-* ++e+C fh13102 103 TDVEPC 108 PF00520.21.ls: domain 1 of 1, from 251 to 439: score 156.8, E = 5.2e-44 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +++ v++v+Ft+E+l+++i +++k ++++ Ni+Df+++l fh13102 251 YIEGVCVVWFTFEFLMRVIFCPNK------VEFIKNSLNIIDFVAIL 291 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL p+++++ ls l ++ ++l++lr++R++R fh13102 292 PFYLEVGLSGLS------------------SkAAKDVLGFLRVVRFVR-- 321 RllrlirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFai +lr++++ + + ++ l+ lg++ +s ++lll+++l+++ i fh13102 322 -ILRIFKLTR------HFVG--LRVLGhTLRASTNEFLLLIIFLALGVLI 362 igvqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmp ++ +++++ +++ ++t+F +++ +f+w+ +tmTt G+gd++p fh13102 363 FATMIYYAERIGAQpndPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYP 412 dtlagtvlgyiyfvsfiilgsflllNLfiavi<-* + t+ g++++ +++ l+++l+++++++vi fh13102 413 Q----TWSGMLVG-ALCALAGVLTIAMPVPVI 439 PF00520.21.fs: domain 1 of 1, from 251 to 439: score 155.0, E = 1.8e-43 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +++ v++v+Ft+E+l+++i +++k ++++ Ni+Df+++l fh13102 251 YIEGVCVVWFTFEFLMRVIFCPNK------VEFIKNSLNIIDFVAIL 291 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL p+++++ ls l ++ ++l++lr++R++R fh13102 292 PFYLEVGLSGLS------------------SkAAKDVLGFLRVVRFVR-- 321 RllrlirrapglfRWelrtlWelnslg.rslksllnvllllllllfiFai +lr++++ + + ++ l+ lg++ +s ++lll+++l+++ i fh13102 322 -ILRIFKLTR------HFVG--LRVLGhTLRASTNEFLLLIIFLALGVLI 362 igvqlFggklnkcc...npingntnFdsfgnaflwlFqtmTteGwgdvmp ++ +++++ +++ ++t+F +++ +f+w+ +tmTt G+gd++p fh13102 363 FATMIYYAERIGAQpndPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYP 412 dtlagtvlgyiyfvsfiilgsflllNLfiavi<-* + t+ g++++ +++ l+++l+++++++vi fh13102 413 Q----TWSGMLVG-ALCALAGVLTIAMPVPVI 439 PF07885.6.fs: domain 1 of 1, from 355 to 449: score 50.6, E = 2.6e-14 *->iilllvlifgtvyyal.............epeegwewsfldalYFsf ++ l vlif+t +y+ ++ + ++++++ +e+ + + ++++++ fh13102 355 FLALGVLIFATMIYYAerigaqpndpsasEHTHFK--NIPIGFWWAV 399 vTlTTiGYGDivPlstdaGRlftivyiliGiplfalll....avlgrflt vT+TT GYGD++P+ t G l+ + +l G+ +a+ ++ +++g + + fh13102 400 VTMTTLGYGDMYPQ-TWSGMLVGALCALAGVLTIAMPVpvivNNFGMYYS 448 e<-* fh13102 449 L 449 PF07885.6.ls: domain 1 of 1, from 355 to 449: score 52.6, E = 1.3e-12 *->iilllvlifgtvyyal.............epeegwewsfldalYFsf ++ l vlif+t +y+ ++ + ++++++ +e+ + + ++++++ fh13102 355 FLALGVLIFATMIYYAerigaqpndpsasEHTHFK--NIPIGFWWAV 399 vTlTTiGYGDivPlstdaGRlftivyiliGiplfalll....avlgrflt vT+TT GYGD++P+ t G l+ + +l G+ +a+ ++ +++g + + fh13102 400 VTMTTLGYGDMYPQ-TWSGMLVGALCALAGVLTIAMPVpvivNNFGMYYS 448 e<-* fh13102 449 L 449 //