hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-08344243/chunk_1/iprscan-20090618-08344243.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13114 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 265.1 1.3e-76 6 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 255.0 1.4e-73 6 PF00397.16.ls WW domain 101.0 3.2e-27 2 PF00397.16.fs WW domain 97.0 3.4e-26 2 PF00625.11.fs Guanylate kinase 46.5 2.2e-12 1 PF00625.11.ls Guanylate kinase 13.5 7e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00625.11.fs 1/1 148 191 .. 1 45 [. 46.5 2.2e-12 PF00625.11.ls 1/1 148 243 .. 1 107 [] 13.5 7e-06 PF00397.16.ls 1/2 305 334 .. 1 30 [] 55.0 2.3e-13 PF00397.16.fs 1/2 305 334 .. 1 30 [] 53.0 7.2e-14 PF00397.16.ls 2/2 364 393 .. 1 30 [] 46.0 1.2e-10 PF00397.16.fs 2/2 364 393 .. 1 30 [] 44.0 2.4e-11 PF00595.14.ls 2/6 476 557 .. 1 86 [] 32.3 1.5e-06 PF00595.14.fs 2/6 476 542 .. 1 72 [. 32.1 2.3e-08 PF00595.14.fs 3/6 647 724 .. 1 86 [] 42.3 3.2e-11 PF00595.14.ls 3/6 647 724 .. 1 86 [] 44.2 4.1e-10 PF00595.14.fs 4/6 845 926 .. 1 86 [] 51.6 7.6e-14 PF00595.14.ls 4/6 845 926 .. 1 86 [] 53.6 6.2e-13 PF00595.14.ls 5/6 1002 1095 .. 1 86 [] 72.8 1e-18 PF00595.14.fs 5/6 1002 1095 .. 1 86 [] 70.8 3e-19 PF00595.14.fs 6/6 1156 1235 .. 1 86 [] 57.1 2.2e-15 PF00595.14.ls 6/6 1156 1235 .. 1 86 [] 59.0 1.4e-14 Alignments of top-scoring domains: PF00625.11.fs: domain 1 of 1, from 148 to 191: score 46.5, E = 2.2e-12 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGT<- TR PR+gEv G+DY+F + + e+ + + + LE ++++GNyYGT fh13114 148 TRSPREGEVPGVDYNFLT-VKEFLDLEQSGTLLEVGTYEGNYYGT 191 * fh13114 - - PF00625.11.ls: domain 1 of 1, from 148 to 243: score 13.5, E = 7e-06 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk TR PR+gEv G+DY+F + + e+ + + + LE ++++GNyYGT k fh13114 148 TRSPREGEVPGVDYNFLT-VKEFLDLEQSGTLLEVGTYEGNYYGTPK 193 eaVrqvaksGkiciLDvepQGvkqlr..taelsNPvsvFIaPpSlqelek + + v+ + ++ +++ +l++++++ P+ + +S ++++ fh13114 194 PPSQPVSGKVIT------TDALHSLQsgSKQST-PK----RTKSYNDMQN 232 rLrgrnketEEs<-* + ++ e EE+ fh13114 233 A-GIVHAENEEE 243 PF00397.16.ls: domain 1 of 2, from 305 to 334: score 55.0, E = 2.3e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp++We++++++G +Y+++hnTktT+W +P fh13114 305 LPENWEMAYTENGEVYFIDHNTKTTSWLDP 334 PF00397.16.fs: domain 1 of 2, from 305 to 334: score 53.0, E = 7.2e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp++We++++++G +Y+++hnTktT+W +P fh13114 305 LPENWEMAYTENGEVYFIDHNTKTTSWLDP 334 PF00397.16.ls: domain 2 of 2, from 364 to 393: score 46.0, E = 1.2e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe++ dp +YY++h++++Tq+e+P fh13114 364 LPAGWEKIEDPVYGIYYVDHINRKTQYENP 393 PF00397.16.fs: domain 2 of 2, from 364 to 393: score 44.0, E = 2.4e-11 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe++ dp +YY++h++++Tq+e+P fh13114 364 LPAGWEKIEDPVYGIYYVDHINRKTQYENP 393 PF00595.14.ls: domain 2 of 6, from 476 to 557: score 32.3, E = 1.5e-06 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +l k + g+Gf+++gg++ +d+ + +++++ + g+A+ +G+ fh13114 476 HTKLRK--SSRGFGFTVVGGDE--PDEFLQIKSLVLD-GPAALDGKM 517 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* + GD+I+svN++ + +++h+++v++ ++++ + +v L++ fh13114 518 ETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIgASVDLELC 557 PF00595.14.fs: domain 2 of 6, from 476 to 542: score 32.1, E = 2.3e-08 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +l k + g+Gf+++gg++ +d+ + +++++ + g+A+ +G+ fh13114 476 HTKLRK--SSRGFGFTVVGGDE--PDEFLQIKSLVLD-GPAALDGKM 517 qaGDqIlsvNGqdlenlsheeavla<-* + GD+I+svN++ + +++h+++v++ fh13114 518 ETGDVIVSVNDTCVLGHTHAQVVKI 542 PF00595.14.fs: domain 3 of 6, from 647 to 724: score 42.3, E = 3.2e-11 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v++ k ++ g+Gf+i+ +++g g v+ ++ + + G L fh13114 647 TVHIVK--GPMGFGFTIADSPGGG---GQRVKQIVDS---PRCRG-L 684 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GD I++vN +++ l+h ++v++l +++++sevtL+v+ fh13114 685 KEGDLIVEVNKKNVQALTHNQVVDMLVECPKgSEVTLLVQ 724 PF00595.14.ls: domain 3 of 6, from 647 to 724: score 44.2, E = 4.1e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v++ k ++ g+Gf+i+ +++g g v+ ++ + + G L fh13114 647 TVHIVK--GPMGFGFTIADSPGGG---GQRVKQIVDS---PRCRG-L 684 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* ++GD I++vN +++ l+h ++v++l +++++sevtL+v+ fh13114 685 KEGDLIVEVNKKNVQALTHNQVVDMLVECPKgSEVTLLVQ 724 PF00595.14.fs: domain 4 of 6, from 845 to 926: score 51.6, E = 7.6e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ l + k g+Gf+i gg++ g ++i++ +++p gaA+ +GrL fh13114 845 DIFLWR--KETGFGFRILGGNEPG--EPIYIGHIVPL-GAADTDGRL 886 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* + GD ++ v+G+++ + sh +v++++++ +++ v Ltv+ fh13114 887 RSGDELICVDGTPVIGKSHQLVVQLMQQAAKqGHVNLTVR 926 PF00595.14.ls: domain 4 of 6, from 845 to 926: score 53.6, E = 6.2e-13 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ l + k g+Gf+i gg++ g ++i++ +++p gaA+ +GrL fh13114 845 DIFLWR--KETGFGFRILGGNEPG--EPIYIGHIVPL-GAADTDGRL 886 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* + GD ++ v+G+++ + sh +v++++++ +++ v Ltv+ fh13114 887 RSGDELICVDGTPVIGKSHQLVVQLMQQAAKqGHVNLTVR 926 PF00595.14.ls: domain 5 of 6, from 1002 to 1095: score 72.8, E = 1e-18 *->evtlekedkrgglGfsikggsdkga...........dkgifvsevlp +v + ++ +++g+Gf i++ + + +++ ++ +++ + ++++ fh13114 1002 DVEIRRG-ENEGFGFVIVSSVSRPEagttfagnacvAMPHKIGRIIE 1047 GsgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl G ++A++ G+L++GD+Il+vNG +++n sh ++v ++k++g+ +vtL ++ fh13114 1048 G-SPADRCGKLKVGDRILAVNGCSITNKSHSDIVNLIKEAGN-TVTLRII 1095 <-* fh13114 - - PF00595.14.fs: domain 5 of 6, from 1002 to 1095: score 70.8, E = 3e-19 *->evtlekedkrgglGfsikggsdkga...........dkgifvsevlp +v + ++ +++g+Gf i++ + + +++ ++ +++ + ++++ fh13114 1002 DVEIRRG-ENEGFGFVIVSSVSRPEagttfagnacvAMPHKIGRIIE 1047 GsgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl G ++A++ G+L++GD+Il+vNG +++n sh ++v ++k++g+ +vtL ++ fh13114 1048 G-SPADRCGKLKVGDRILAVNGCSITNKSHSDIVNLIKEAGN-TVTLRII 1095 <-* fh13114 - - PF00595.14.fs: domain 6 of 6, from 1156 to 1235: score 57.1, E = 2.2e-15 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v le+ + g+Gfs++gg + + ++v ++ ++ g+Ae+ G+ fh13114 1156 TVELER--GAKGFGFSLRGGREYN--MDLYVLRLAED-GPAERCGKM 1197 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD Il++NG+ + n+ h +a++++k+ g v+L ++ fh13114 1198 RIGDEILEINGETTKNMKHSRAIELIKNGGR-RVRLFLK 1235 PF00595.14.ls: domain 6 of 6, from 1156 to 1235: score 59.0, E = 1.4e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v le+ + g+Gfs++gg + + ++v ++ ++ g+Ae+ G+ fh13114 1156 TVELER--GAKGFGFSLRGGREYN--MDLYVLRLAED-GPAERCGKM 1197 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD Il++NG+ + n+ h +a++++k+ g v+L ++ fh13114 1198 RIGDEILEINGETTKNMKHSRAIELIKNGGR-RVRLFLK 1235 //