hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-08344243/chunk_1/iprscan-20090618-08344243.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13114 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 422.3 2.7e-122 6 SM00072 167.2 1.6e-45 1 SM00456 96.5 3.2e-24 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/6 28 107 .. 1 80 [] 24.1 0.02 SM00072 1/1 113 298 .. 1 203 [] 167.2 1.6e-45 SM00456 1/2 304 336 .. 1 34 [] 51.0 1.6e-10 SM00456 2/2 363 395 .. 1 34 [] 45.5 7.1e-09 SM00228 2/6 484 560 .. 1 80 [] 75.9 5.1e-18 SM00228 3/6 655 727 .. 1 80 [] 66.5 3.3e-15 SM00228 4/6 853 929 .. 1 80 [] 78.9 6.4e-19 SM00228 5/6 1011 1098 .. 1 80 [] 93.2 3.1e-23 SM00228 6/6 1164 1238 .. 1 80 [] 83.8 2.1e-20 Alignments of top-scoring domains: SM00228: domain 1 of 6, from 28 to 107: score 24.1, E = 0.02 *->gglGfsivg..........gifvssvvpGspAakaGrkslglLkvGD g lG+++ g+ ++++ + g++ + +G p G ++L +G fh13114 28 GELGVTVLGgaehgefpyvGAVAAVEAAGLPGGGEG----PRLGEGE 70 vIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +leV G + v+gl+ ++++ ++ ++++ vt++ +R+g fh13114 71 LLLEVQG-VRVSGLPRYDVLGVIDSCKE-----AVTFKAVRQG 107 SM00072: domain 1 of 1, from 113 to 298: score 167.2, E = 1.6e-45 *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE d+R++ ++++ +K++ +++L+q+++d+ + ++V++TTR+pR+gE fh13114 113 DLRHFLNQRF---QKGSPDHELQQTIRDN-LYRHAVPCTTRSPREGE 155 vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae v+G vDY+F + ++ef ++++sg +lE g+y+gn yYGT+k++ ++v fh13114 156 VPG--VDYNFLT-VKEFLDLEQSGTLLEVGTYEGN-YYGTPKPPSQPV-- 199 kGKhclLDidpqgvkqlkka.r.R.kselnpiviFIapPsleeleerlrg +GK+ +D+ ++ + k+++++R+ks++++ I + + ee+ + ++ fh13114 200 SGKVITTDALHSLQSGSKQStPkRtKSYNDMQNAGIVHAENEEEDDVPE- 248 aeqRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYke ++++ + + +++++ +e + ++ + i+ ++ d ++ fh13114 249 ---MNSSFTAADSGEQEEHTLQETALPP-----VNSSIIAAPITDPS-QK 289 Lkeileaeq<-* + ++l++ fh13114 290 FPQYLPLSA 298 SM00456: domain 1 of 2, from 304 to 336: score 51.0, E = 1.6e-10 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plP++We++++++ G +Y+++h+Tk+t+W +Pr fh13114 304 PLPENWEMAYTEN-GEVYFIDHNTKTTSWLDPRC 336 SM00456: domain 2 of 2, from 363 to 395: score 45.5, E = 7.1e-09 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lP+gWe+++dp +YY++h++++tq+e P++ fh13114 363 ELPAGWEKIEDPV-YGIYYVDHINRKTQYENPVL 395 SM00228: domain 2 of 6, from 484 to 560: score 75.9, E = 5.1e-18 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle g+Gf++vg++++++ + ++s+v ++pAa +G+ + GDvI++ fh13114 484 RGFGFTVVGgdepdeFLQIKSLVLDGPAALDGK-----METGDVIVS 525 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* VN+ t v g th+++v++ ++ + G +v+L+++Rg fh13114 526 VND-TCVLGHTHAQVVKIFQSIPI---GASVDLELCRGY 560 SM00228: domain 3 of 6, from 655 to 727: score 66.5, E = 3.3e-15 *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV g+Gf+i+++++++g v+++v+ G Lk+GD I+eV fh13114 655 MGFGFTIADspgggGQRVKQIVD--SPRCRG------LKEGDLIVEV 693 NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* N ++v+ lth ++vd+l ++++ G++vtL+v+Rgg fh13114 694 NK-KNVQALTHNQVVDMLVECPK---GSEVTLLVQRGG 727 SM00228: domain 4 of 6, from 853 to 929: score 78.9, E = 6.4e-19 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle g+Gf+i g+++++++i++ ++vp ++A+ +Gr L+ GD+++ fh13114 853 TGFGFRILGgnepgePIYIGHIVPLGAADTDGR-----LRSGDELIC 894 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* V+G t+v g++h+ +v+l+++a ++g +v Ltv+R+ fh13114 895 VDG-TPVIGKSHQLVVQLMQQAAKQG---HVNLTVRRKV 929 SM00228: domain 5 of 6, from 1011 to 1098: score 93.2, E = 3.1e-23 *->gglGfsivg...................gifvssvvpGspAakaGrk +g+Gf iv++ ++++ +++ ++ ++ + ++++GspA+++G+ fh13114 1011 EGFGFVIVSsvsrpeagttfagnacvamPHKIGRIIEGSPADRCGK- 1056 slglLkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlR LkvGD+Il+VNG s+++++h ++v+l+k+ag+ +vtL +++ fh13114 1057 ----LKVGDRILAVNG-CSITNKSHSDIVNLIKEAGN-----TVTLRIIP 1096 gg<-* g+ fh13114 1097 GD 1098 SM00228: domain 6 of 6, from 1164 to 1238: score 83.8, E = 2.1e-20 *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle +g+Gfs++g+++ + ++v ++ +++pA+++G+ +++GD+Ile fh13114 1164 KGFGFSLRGgreynmDLYVLRLAEDGPAERCGK-----MRIGDEILE 1205 VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +NG + ++++ h +a++l+k+ g+ +v+L ++Rg+ fh13114 1206 ING-ETTKNMKHSRAIELIKNGGR-----RVRLFLKRGD 1238 //