hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-16505899/chunk_1/iprscan-20080809-16505899.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13184 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 257.0 3.7e-74 5 PF00041.11.fs Fibronectin type III domain 251.9 1.2e-72 5 PF07679.6.fs Immunoglobulin I-set domain 195.3 2.5e-56 6 PF00047.15.ls Immunoglobulin domain 193.9 3.6e-55 6 PF00047.15.fs Immunoglobulin domain 182.6 8.9e-52 6 PF07679.6.ls Immunoglobulin I-set domain 174.5 2.5e-49 5 PF07686.7.fs Immunoglobulin V-set domain 47.8 5.5e-13 5 PF07686.7.ls Immunoglobulin V-set domain 34.8 2.7e-07 3 PF08205.3.fs CD80-like C2-set immunoglobulin domain 19.5 6.5e-05 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/5 49 146 .. 1 96 [] 11.8 0.00011 PF00047.15.fs 1/6 64 130 .. 1 65 [] 18.7 0.00022 PF00047.15.ls 1/6 64 130 .. 1 65 [] 20.6 0.0051 PF07679.6.ls 2/5 256 343 .. 1 96 [] 54.7 2.8e-13 PF07679.6.fs 3/6 264 343 .. 8 96 .] 54.2 3.3e-15 PF00047.15.ls 3/6 271 328 .. 1 65 [] 52.3 1.5e-12 PF00047.15.fs 3/6 271 328 .. 1 65 [] 50.4 4.4e-13 PF07679.6.ls 3/5 347 435 .. 1 96 [] 33.3 8e-07 PF07679.6.fs 4/6 361 425 .. 15 86 .. 40.5 3.3e-11 PF00047.15.fs 4/6 361 420 .. 1 65 [] 23.5 1.1e-05 PF00047.15.ls 4/6 361 420 .. 1 65 [] 25.3 0.00019 PF07679.6.ls 4/5 440 528 .. 1 96 [] 30.1 3.3e-06 PF00047.15.fs 5/6 455 513 .. 1 65 [] 31.0 9.4e-08 PF07679.6.fs 5/6 455 528 .. 15 96 .] 33.3 4.1e-09 PF00047.15.ls 5/6 455 513 .. 1 65 [] 32.9 1.1e-06 PF07686.7.ls 3/3 531 623 .. 1 141 [] 26.7 7.7e-05 PF07686.7.fs 5/5 531 623 .. 1 141 [] 25.0 1.4e-06 PF07679.6.fs 6/6 532 622 .. 1 96 [] 42.7 7.7e-12 PF07679.6.ls 5/5 532 622 .. 1 96 [] 44.6 3.2e-10 PF00047.15.fs 6/6 546 607 .. 1 65 [] 48.8 1.2e-12 PF00047.15.ls 6/6 546 607 .. 1 65 [] 50.7 4.5e-12 PF00041.11.fs 1/5 626 715 .. 1 84 [] 61.5 5e-17 PF00041.11.ls 1/5 626 715 .. 1 84 [] 63.5 6.3e-16 PF00041.11.ls 2/5 728 814 .. 1 84 [] 42.6 1.3e-09 PF00041.11.fs 2/5 728 814 .. 1 84 [] 40.6 5.1e-11 PF00041.11.fs 3/5 826 921 .. 1 84 [] 75.8 4e-21 PF00041.11.ls 3/5 826 921 .. 1 84 [] 77.8 3.2e-20 PF00041.11.ls 4/5 932 1019 .. 1 84 [] 67.8 3.2e-17 PF00041.11.fs 4/5 932 1019 .. 1 84 [] 65.8 3e-18 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 5, from 49 to 146: score 11.8, E = 0.00011 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P++t + +++++V +++++ C+++G Pe + W++dG ++ fh13184 49 PVITEQSpRRLVVFPTDDISLKCEASGKPEVQFRWTRDGVHFKP--- 92 psdrfkvtydg..GsgtytLtIsnvqpdD..sGkYtCvAtNsaGea.eas + + vt+ +++sg t t +n + + + G+Y+C A+N+ G+a + + fh13184 93 -KEELGVTVYQspHSGSFTITGNNSNFAQrfQGIYRCFASNKLGTAmSHE 141 aeLtV<-* ++L fh13184 142 IRLMA 146 PF00047.15.fs: domain 1 of 6, from 64 to 130: score 18.7, E = 0.00022 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++ +L C++ +g p+v+++W+r+g + + ++ +++++++ ++ + fh13184 64 TDDISLKCEA--SGKPEVQFRWTRDGVhFKpKEELGVTVYQSPHSGS 108 tsLtit....nvtpeDggtYtCvv<-* +tit++++n+ + g+Y+C + fh13184 109 --FTITgnnsNFAQRFQGIYRCFA 130 PF00047.15.ls: domain 1 of 6, from 64 to 130: score 20.6, E = 0.0051 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++ +L C++ +g p+v+++W+r+g + + ++ +++++++ ++ + fh13184 64 TDDISLKCEA--SGKPEVQFRWTRDGVhFKpKEELGVTVYQSPHSGS 108 tsLtit....nvtpeDggtYtCvv<-* +tit++++n+ + g+Y+C + fh13184 109 --FTITgnnsNFAQRFQGIYRCFA 130 PF07679.6.ls: domain 2 of 5, from 256 to 343: score 54.7, E = 2.8e-13 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll F + ++ +++ G+++++eC ++G+P+Pt+ W++ p+++ fh13184 256 LLFPTNSsSHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPA--- 299 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV +vty + + tL ++v +D G+Y+C A+Ns G+a +tV fh13184 300 ----DRVTYQN--HNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTV 343 <-* fh13184 - - PF07679.6.fs: domain 3 of 6, from 264 to 343: score 54.2, E = 3.3e-15 *->kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvt + +++ G+++++eC ++G+P+Pt+ W++ p+++ +vt fh13184 264 SHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPA-------DRVT 303 ydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* y + + tL ++v +D G+Y+C A+Ns G+a +tV fh13184 304 YQN--HNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTV 343 PF00047.15.ls: domain 3 of 6, from 271 to 328: score 52.3, E = 1.5e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L C + +g p +t+ Wlr +++++ + ++++ +n++ fh13184 271 GQPLVLECIA--EGFPTPTIKWLRPSGpMPaDRVTYQNHNKT----- 310 tsLtitnvtpeDggtYtCvv<-* L++++v +eD+g+Y+C + fh13184 311 --LQLLKVGEEDDGEYRCLA 328 PF00047.15.fs: domain 3 of 6, from 271 to 328: score 50.4, E = 4.4e-13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L C + +g p +t+ Wlr +++++ + ++++ +n++ fh13184 271 GQPLVLECIA--EGFPTPTIKWLRPSGpMPaDRVTYQNHNKT----- 310 tsLtitnvtpeDggtYtCvv<-* L++++v +eD+g+Y+C + fh13184 311 --LQLLKVGEEDDGEYRCLA 328 PF07679.6.ls: domain 3 of 5, from 347 to 435: score 33.3, E = 8e-07 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ + kp++ Ge+ar++C+V+G P+P+V+W +G p+ + l+ fh13184 347 PYWLHKPQSHLYGPGETARLDCQVQGRPQPEVTWRINGIPVEE-LAK 392 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++++++ L+ snvqp+D + C A+N+ G a a V fh13184 393 DQKYRIQRGA------LILSNVQPSDTMVTQCEARNRHGLLLANAYIYV 435 -* fh13184 - - PF07679.6.fs: domain 4 of 6, from 361 to 425: score 40.5, E = 3.3e-11 *->GesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgt Ge+ar++C+V+G P+P+V+W +G p+ + l+ ++++++ fh13184 361 GETARLDCQVQGRPQPEVTWRINGIPVEE-LAKDQKYRIQRGA---- 402 ytLtIsnvqpdDsGkYtCvAtNsaG<-* L+ snvqp+D + C A+N+ G fh13184 403 --LILSNVQPSDTMVTQCEARNRHG 425 PF00047.15.fs: domain 4 of 6, from 361 to 420: score 23.5, E = 1.1e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+++L C+v g p+++vtW+ ng ++++ + ++ + + fh13184 361 GETARLDCQV--QGRPQPEVTWRINGIpVEeLAKDQKYRIQRGA--- 402 tsLtitnvtpeDggtYtCvv<-* L ++nv+p+D+ + C++ fh13184 403 --LILSNVQPSDTMVTQCEA 420 PF00047.15.ls: domain 4 of 6, from 361 to 420: score 25.3, E = 0.00019 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+++L C+v g p+++vtW+ ng ++++ + ++ + + fh13184 361 GETARLDCQV--QGRPQPEVTWRINGIpVEeLAKDQKYRIQRGA--- 402 tsLtitnvtpeDggtYtCvv<-* L ++nv+p+D+ + C++ fh13184 403 --LILSNVQPSDTMVTQCEA 420 PF07679.6.ls: domain 4 of 5, from 440 to 528: score 30.1, E = 3.3e-06 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvl k+++ ++ + G++a + Ck+ G P P+V+W+ +G + + fh13184 440 AKILTADnQTYMAVQGSTAYLLCKAFGAPVPSVQWLDEdGTTVLQ-- 484 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt ++rf ++g tL I++ q D G Y C A N ++ a+L+ fh13184 485 --DERFFPYANG-----TLGIRDLQANDTGRYFCLAANDQNNVTIMANLK 527 V<-* V fh13184 528 V 528 PF00047.15.fs: domain 5 of 6, from 455 to 513: score 31.0, E = 9.4e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L C + fg p ++v+Wl +++++ ++ + ng+ fh13184 455 GSTAYLLCKA--FGAPVPSVQWLDEDGtTVlQDERFFPYANGT---- 495 tsLtitnvtpeDggtYtCvv<-* L i++++ +D+g Y+C + fh13184 496 --LGIRDLQANDTGRYFCLA 513 PF07679.6.fs: domain 5 of 6, from 455 to 528: score 33.3, E = 4.1e-09 *->GesarfeCkVtGtPePtVsWfKd.GqplssvllpsdrfkvtydgGsg G++a + Ck+ G P P+V+W+ +G + + ++rf ++g fh13184 455 GSTAYLLCKAFGAPVPSVQWLDEdGTTVLQ----DERFFPYANG--- 494 tytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* tL I++ q D G Y C A N ++ a+L+V fh13184 495 --TLGIRDLQANDTGRYFCLAANDQNNVTIMANLKV 528 PF00047.15.ls: domain 5 of 6, from 455 to 513: score 32.9, E = 1.1e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L C + fg p ++v+Wl +++++ ++ + ng+ fh13184 455 GSTAYLLCKA--FGAPVPSVQWLDEDGtTVlQDERFFPYANGT---- 495 tsLtitnvtpeDggtYtCvv<-* L i++++ +D+g Y+C + fh13184 496 --LGIRDLQANDTGRYFCLA 513 PF07686.7.ls: domain 3 of 3, from 531 to 623: score 26.7, E = 7.7e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + q+tq pr s + + G +vt++C+ s + fh13184 531 ATQITQ-GPR------------STIEKKGSRVTFTCQAS-----FDP 559 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls s ++ si+W + g+ ++++ + fh13184 560 SLQP-SITW---RGDGRDLQELG--------------------DSDKYFI 585 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++ L I++l sD G Y C+ s++ +v ++ +L V+ fh13184 586 EDGR-----LVIHSLDYSDQGNYSCVASTE-LDVVESRAQLLVV 623 PF07686.7.fs: domain 5 of 5, from 531 to 623: score 25.0, E = 1.4e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + q+tq pr s + + G +vt++C+ s + fh13184 531 ATQITQ-GPR------------STIEKKGSRVTFTCQAS-----FDP 559 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls s ++ si+W + g+ ++++ + fh13184 560 SLQP-SITW---RGDGRDLQELG--------------------DSDKYFI 585 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++ L I++l sD G Y C+ s++ +v ++ +L V+ fh13184 586 EDGR-----LVIHSLDYSDQGNYSCVASTE-LDVVESRAQLLVV 623 PF07679.6.fs: domain 6 of 6, from 532 to 622: score 42.7, E = 7.7e-12 *->PkFtqkpkdveVqeGesarfeCkVtGtP..ePtVsWfKdGqplssvl ++tq p++ + G++++f+C+++ +P+ +P+++W dG++l++ fh13184 532 TQITQGPRSTIEKKGSRVTFTCQASFDPslQPSITWRGDGRDLQE-- 576 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt l ++ + +dg +L+I + +D G Y+CvA+ + +e++a+L fh13184 577 LGDSDKYFIEDG-----RLVIHSLDYSDQGNYSCVASTELDVVESRAQLL 621 V<-* V fh13184 622 V 622 PF07679.6.ls: domain 5 of 5, from 532 to 622: score 44.6, E = 3.2e-10 *->PkFtqkpkdveVqeGesarfeCkVtGtP..ePtVsWfKdGqplssvl ++tq p++ + G++++f+C+++ +P+ +P+++W dG++l++ fh13184 532 TQITQGPRSTIEKKGSRVTFTCQASFDPslQPSITWRGDGRDLQE-- 576 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt l ++ + +dg +L+I + +D G Y+CvA+ + +e++a+L fh13184 577 LGDSDKYFIEDG-----RLVIHSLDYSDQGNYSCVASTELDVVESRAQLL 621 V<-* V fh13184 622 V 622 PF00047.15.fs: domain 6 of 6, from 546 to 607: score 48.8, E = 1.2e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++vt+tC++s + ++++tW+ +g +l++ +++ + ++++ fh13184 546 GSRVTFTCQASFDPSLQPSITWRGDGRdLQeLGDSDKYFIEDGR--- 589 tsLtitnvtpeDggtYtCvv<-* L+i++++++D g+Y+Cv+ fh13184 590 --LVIHSLDYSDQGNYSCVA 607 PF00047.15.ls: domain 6 of 6, from 546 to 607: score 50.7, E = 4.5e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++vt+tC++s + ++++tW+ +g +l++ +++ + ++++ fh13184 546 GSRVTFTCQASFDPSLQPSITWRGDGRdLQeLGDSDKYFIEDGR--- 589 tsLtitnvtpeDggtYtCvv<-* L+i++++++D g+Y+Cv+ fh13184 590 --LVIHSLDYSDQGNYSCVA 607 PF00041.11.fs: domain 1 of 5, from 626 to 715: score 61.5, E = 5e-17 *->PsaPtnltvtdv...tstsltlsWspPt.gngpitgYevtyRqpkng P+++ +l +d++ t + +++sWsp+++ n+pi++Y ++ ++k fh13184 626 PGPVPRLVLSDLhllTQSQVRVSWSPAEdHNAPIEKYDIEF-EDKEM 671 gewkelt...vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +k+++ ++vpg++ts tl+ L P++ Yt+rV+A+n G+G++S fh13184 672 APEKWYSlgkVPGNQTSTTLK-LSPYVHYTFRVTAINKYGpGEPS 715 PF00041.11.ls: domain 1 of 5, from 626 to 715: score 63.5, E = 6.3e-16 *->PsaPtnltvtdv...tstsltlsWspPt.gngpitgYevtyRqpkng P+++ +l +d++ t + +++sWsp+++ n+pi++Y ++ ++k fh13184 626 PGPVPRLVLSDLhllTQSQVRVSWSPAEdHNAPIEKYDIEF-EDKEM 671 gewkelt...vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +k+++ ++vpg++ts tl+ L P++ Yt+rV+A+n G+G++S fh13184 672 APEKWYSlgkVPGNQTSTTLK-LSPYVHYTFRVTAINKYGpGEPS 715 PF00041.11.ls: domain 2 of 5, from 728 to 814: score 42.6, E = 1.3e-09 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ P +++ +++ +t ++++W+p + ++n+p Y+v++R p+++ fh13184 728 PeKNPVDVKGEGNETTNMVITWKPLRwmdWNAPQVQYRVQWR-PQGT 773 ge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++w+e++v+ + ++++ ++Y+++VqAvn +G+Gpe fh13184 774 RGpWQEQIVSDPF--LVVSNTSTFVPYEIKVQAVNSQGkGPEP 814 PF00041.11.fs: domain 2 of 5, from 728 to 814: score 40.6, E = 5.1e-11 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ P +++ +++ +t ++++W+p + ++n+p Y+v++R p+++ fh13184 728 PeKNPVDVKGEGNETTNMVITWKPLRwmdWNAPQVQYRVQWR-PQGT 773 ge.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++w+e++v+ + ++++ ++Y+++VqAvn +G+Gpe fh13184 774 RGpWQEQIVSDPF--LVVSNTSTFVPYEIKVQAVNSQGkGPEP 814 PF00041.11.fs: domain 3 of 5, from 826 to 921: score 75.8, E = 4e-21 *->PsaPtnltvtdv.tstsltlsWspPt...gngpitgYevtyRqpkng P a l +++ +s+ + + W p + + g++ gY+vty + +++ fh13184 826 PQAIPELEGIEIlNSSAVLVKWRPVDlaqVKGHLRGYNVTY-WREGS 871 ge........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS + ++++++ ++ ++ vp +tts++l+gL+P++ Y++ VqA ng G+Gp S fh13184 872 QRkhskrhihKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGsGPAS 921 <-* fh13184 - - PF00041.11.ls: domain 3 of 5, from 826 to 921: score 77.8, E = 3.2e-20 *->PsaPtnltvtdv.tstsltlsWspPt...gngpitgYevtyRqpkng P a l +++ +s+ + + W p + + g++ gY+vty + +++ fh13184 826 PQAIPELEGIEIlNSSAVLVKWRPVDlaqVKGHLRGYNVTY-WREGS 871 ge........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS + ++++++ ++ ++ vp +tts++l+gL+P++ Y++ VqA ng G+Gp S fh13184 872 QRkhskrhihKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGsGPAS 921 <-* fh13184 - - PF00041.11.ls: domain 4 of 5, from 932 to 1019: score 67.8, E = 3.2e-17 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P+ P+ l+ + +++tsl l+W+pP + ng++tgY + y+ p ++g++ fh13184 932 PGHPEALHLECQSNTSLLLRWQPPLsHNGVLTGYVLSYH-PLDEGGk 977 .wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++++ ++ ++++lt+L P+ +Y +++qA + +G+G+ fh13184 978 gQLSFNLRDPELrTHNLTDLSPHLRYRFQLQATTKEGpGEAI 1019 PF00041.11.fs: domain 4 of 5, from 932 to 1019: score 65.8, E = 3e-18 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P+ P+ l+ + +++tsl l+W+pP + ng++tgY + y+ p ++g++ fh13184 932 PGHPEALHLECQSNTSLLLRWQPPLsHNGVLTGYVLSYH-PLDEGGk 977 .wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++++ ++ ++++lt+L P+ +Y +++qA + +G+G+ fh13184 978 gQLSFNLRDPELrTHNLTDLSPHLRYRFQLQATTKEGpGEAI 1019 //