hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-16505899/chunk_1/iprscan-20080809-16505899.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13184 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 266.9 1.6e-75 6 SM00408 232.8 2.9e-65 5 SM00060 158.9 5.2e-43 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/6 56 147 .. 1 58 [] 32.5 5.9e-05 SM00408 1/5 62 135 .. 1 56 [] 31.5 0.00012 SM00409 2/6 157 244 .. 1 58 [] 43.8 2.3e-08 SM00409 3/6 263 344 .. 1 58 [] 53.9 2.1e-11 SM00408 2/5 269 333 .. 1 56 [] 86.3 3.8e-21 SM00409 4/6 353 436 .. 1 58 [] 44.0 2e-08 SM00408 3/5 359 425 .. 1 56 [] 41.9 8.7e-08 SM00409 5/6 447 529 .. 1 58 [] 36.9 2.7e-06 SM00408 4/5 453 518 .. 1 56 [] 36.7 3.1e-06 SM00409 6/6 538 623 .. 1 58 [] 55.9 5.3e-12 SM00408 5/5 544 612 .. 1 56 [] 36.5 3.6e-06 SM00060 1/4 626 712 .. 1 69 [] 35.9 5.3e-06 SM00060 2/4 729 811 .. 1 69 [] 32.9 4.4e-05 SM00060 3/4 826 918 .. 1 69 [] 40.5 2.3e-07 SM00060 4/4 932 1016 .. 1 69 [] 49.6 4.1e-10 Alignments of top-scoring domains: SM00409: domain 1 of 6, from 56 to 147: score 32.5, E = 5.9e-05 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++v + ++++L+C+as+++ +++W++++ + +++ + + + fh13184 56 PRrLVVFPTDDISLKCeASgkpevQFRWTrdgvhfkpkeelgvtvyq 102 ......LtI.nvtpeDse..sgGtYtCaat..sgsasseqgttLtVl<-* +++++++tI++ + +++ + G+Y+C a+++ g+a s ++++L + fh13184 103 sphsgsFTItGNNSNFAQrfQ-GIYRCFASnkLGTAMS-HEIRLMAE 147 SM00408: domain 1 of 5, from 62 to 135: score 31.5, E = 0.00012 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst + ++++L+C+asg+p+ +++W+++g + ++++ + + +++++++ fh13184 62 FPTDDISLKCEASGKPEVQFRWTRdGVHFKpkeelgvtvyqspHSGS 108 Lti....knvsleDsGlYtCvArNsvg<-* ti+++++n++ G+Y+C+A+N+ g fh13184 109 FTItgnnSNFAQRFQGIYRCFASNKLG 135 SM00409: domain 2 of 6, from 157 to 244: score 43.8, E = 2.3e-08 *->pp.vtvkeGesvtLtC.as......titWy................. ++v+v eGesv+L+C+ +++ + +i+W++++ + +++ + + ++ fh13184 157 VKpVEVEEGESVVLPCnPPpsaeplRIYWMnskilhikqdervtmgq 203 ...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++L + nv +D + +Y C a+ +++ +++ +++ L+V+ fh13184 204 ngnLYFaNVLTSDN--HSDYICHAHfpgtRTIIQK-EPIDLRVK 244 SM00409: domain 3 of 6, from 263 to 344: score 53.9, E = 2.1e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++++++ G++++L+C a++ +++ti+W++++++ + ++ + +++++ fh13184 263 SShLVALQGQPLVLECiAEgfptpTIKWLrpsgpmpadrvtyqnhnk 309 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L++ +v +eD G+Y+C a+++ gsa ++tV+ fh13184 310 tLQLlKVGEEDD---GEYRCLAEnsLGSARH--AYYVTVE 344 SM00408: domain 2 of 5, from 269 to 333: score 86.3, E = 3.8e-21 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn l+Gq+++L+C+a+g+p+p+I+Wl+++ p+p ++ + +++++tL++ fh13184 269 LQGQPLVLECIAEGFPTPTIKWLRpSGPMPadrvtyqnHNKTLQLLK 315 vsleDsGlYtCvArNsvg<-* v +eD+G+Y+C+A+Ns g fh13184 316 VGEEDDGEYRCLAENSLG 333 SM00409: domain 4 of 6, from 353 to 436: score 44.0, E = 2e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++ +Ge+++L C++++ + +++tW+ ++ + ++++ + + fh13184 353 PQsHLYGPGETARLDCqVQgrpqpEVTWRingipveelakdqkyriq 399 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ L+++nv+p+D+ + +C+a++++g + +++++V fh13184 400 rgaLILsNVQPSDT---MVTQCEARnrHGLLLA--NAYIYVV 436 SM00408: domain 3 of 5, from 359 to 425: score 41.9, E = 8.7e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti +G++++L C + g+p p++tW+ +g p+++ ++++ + ++ L + fh13184 359 GPGETARLDCQVQGRPQPEVTWRInGIPVEelakdqkyriQRGALIL 405 knvsleDsGlYtCvArNsvg<-* +nv+++D + +C+ArN++g fh13184 406 SNVQPSDTMVTQCEARNRHG 425 SM00409: domain 5 of 6, from 447 to 529: score 36.9, E = 2.7e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++ ++ G+++ L C+a + + ++++W++ ++++ ++ + + + fh13184 447 NQtYMAVQGSTAYLLCkAFgapvpSVQWLdedgttvlqderffpyan 493 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L I++++++D+ G Y+C a ++ +++ ++L+V+ fh13184 494 gtLGIrDLQANDT---GRYFCLAAndQNNVTI--MANLKVK 529 SM00408: domain 4 of 5, from 453 to 518: score 36.7, E = 3.1e-06 *->leGqsVtLtCpasgdpvpnItWlk...gkplp.......sgstLtik +G ++ L C+a g+pvp+++Wl +++ + l++++ + ++tL i+ fh13184 453 VQGSTAYLLCKAFGAPVPSVQWLDedgTTVLQderffpyANGTLGIR 499 nvsleDsGlYtCvArNsvg<-* + + +D G+Y C+A N + fh13184 500 DLQANDTGRYFCLAANDQN 518 SM00409: domain 6 of 6, from 538 to 623: score 55.9, E = 5.3e-12 *->pp.vtvkeGesvtLtC.as.......titWy................ p+++ k G++vt+tC+as +++ ++itW++++++ + +++++ fh13184 538 PRsTIEKKGSRVTFTCqASfdpslqpSITWRgdgrdlqelgdsdkyf 584 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++L+I+++ ++D+ G+Y C+a++ +++s ++L V fh13184 585 iedgrLVIhSLDYSDQ---GNYSCVASteLDVVES--RAQLLVV 623 SM00408: domain 5 of 5, from 544 to 612: score 36.5, E = 3.6e-06 *->leGqsVtLtCpasgdpv..pnItWlk.gkplp..........sgstL + G Vt+tC as dp +p+ItW+ +g l++ +++++ +++L fh13184 544 KKGSRVTFTCQASFDPSlqPSITWRGdGRDLQelgdsdkyfiEDGRL 590 tiknvsleDsGlYtCvArNsvg<-* i + ++D G+Y+CvA+ + fh13184 591 VIHSLDYSDQGNYSCVASTELD 612 SM00060: domain 1 of 4, from 626 to 712: score 35.9, E = 5.3e-06 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY Pgp+++ l+++d + s +v++sW+p ++++ + +++ +++ fh13184 626 PGPVPR---LVLSDLHLLTQS---QVRVSWSPAedhnapiekyDIEF 666 r.....................ytltgLkPgaepwteYefrVrAvngnda ++++ ++++ + +++++++++ tl+ L+P+ Y+frV+A+n+ + fh13184 667 EdkemapekwyslgkvpgnqtsTTLK-LSPY----VHYTFRVTAINK--Y 709 Geg<-* G+g fh13184 710 GPG 712 SM00060: domain 2 of 4, from 729 to 811: score 32.9, E = 4.4e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P + ++ + +t ++++W+p + + + v+Yr+ fh13184 729 EKNPVD---VKGEGNETT------NMVITWKPLrwmdwnapQVQYRv 766 ....................ytltgLkPgaepwteYefrVrAvngndaGe ++++++++++++++ ++++ ++++ + Ye++V+Avn+ +G fh13184 767 qwrpqgtrgpwqeqivsdpfLVVSNTSTF----VPYEIKVQAVNS--QGK 810 g<-* g fh13184 811 G 811 SM00060: domain 3 of 4, from 826 to 918: score 40.5, E = 2.3e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.............i P + + l+ ++ ++s v ++W p + +++ ++++ fh13184 826 PQAIPE---LEGIEILNSS-----AVLVKWRPVdlaqvkghlrgynV 864 vgYr.........................ytltgLkPgaepwteYefrVr +++r++++++ +++ ++ ++++ ++++++l+gL+P+ + Y+ V+ fh13184 865 TYWRegsqrkhskrhihkdhvvvpanttsVILSGLRPY----SSYHLEVQ 910 AvngndaGeg<-* A+ng +G+g fh13184 911 AFNG--RGSG 918 SM00060: domain 4 of 4, from 932 to 1016: score 49.6, E = 4.1e-10 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY Pg P+ l+++ ++t s+ l+W+pP ++++ +++++Y fh13184 932 PGHPEA---LHLECQSNT------SLLLRWQPPlshngvltgyVLSY 969 r.....................ytltgLkPgaepwteYefrVrAvngnda ++ +++++++ + + ++++ +++ lt+L+P+ +Y+f+++A ++ fh13184 970 HpldeggkgqlsfnlrdpelrtHNLTDLSPH----LRYRFQLQATTK--E 1013 Geg<-* G+g fh13184 1014 GPG 1016 //