hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-16570641/chunk_1/iprscan-20080809-16570641.nocrc
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Query sequence: fh13310
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02985.12.ls HEAT repeat                                    182.4    1.1e-51  10
PF02985.12.fs HEAT repeat                                    165.8      1e-46  11
PF03810.9.fs Importin-beta N-terminal domain                 56.8    4.5e-15   1
PF03810.9.ls Importin-beta N-terminal domain                 58.6    1.9e-14   1
PF00514.13.fs Armadillo/beta-catenin-like repeat              46.1    5.4e-12   5
PF00514.13.ls Armadillo/beta-catenin-like repeat              50.2    6.3e-12   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03810.9.ls   1/1     195   263 ..     1    85 []    58.6  1.9e-14
PF03810.9.fs   1/1     195   263 ..     1    85 []    56.8  4.5e-15
PF02985.12.ls   2/10    286   321 ..     1    36 []    18.4    0.024
PF02985.12.ls   3/10    331   367 ..     1    36 []    13.0     0.98
PF02985.12.ls   4/10    373   408 ..     1    36 []    25.2  0.00021
PF02985.12.fs   7/11    553   589 ..     1    36 []    26.5  1.9e-06
PF02985.12.ls   6/10    553   589 ..     1    36 []    28.5  2.3e-05
PF00514.13.ls   3/5     590   628 ..     1    41 []    20.9   0.0042
PF02985.12.fs   8/11    594   630 ..     1    36 []    30.2  1.7e-07
PF02985.12.ls   7/10    594   630 ..     1    36 []    32.2  1.7e-06
PF02985.12.ls   8/10    636   672 ..     1    36 []    19.2    0.014
PF02985.12.ls   9/10    823   859 ..     1    36 []    26.9  6.4e-05

Alignments of top-scoring domains:
PF03810.9.ls: domain 1 of 1, from 195 to 263: score 58.6, E = 1.9e-14
                   *->AEkqLeqlekqklPgFllaLlqIlansdtssdlqvRqlAalyLKNlI
                       ++ L+q   +++P+F+++L+++l++  +s+d+++R l++l+LKN++
     fh13310   195    VQDKLKQ--LNQFPDFNNYLIFVLTRL-KSEDEPTRSLSGLILKNNV 238  

                   trhWnshrkqggyeqrwlslpeeekeqIknnllnllgs<-*
                   ++h+              s p+ + ++Ik+++ln +g+   
     fh13310   239 KAHYQ-------------SFPPPVADFIKQECLNNIGD    263  

PF03810.9.fs: domain 1 of 1, from 195 to 263: score 56.8, E = 4.5e-15
                   *->AEkqLeqlekqklPgFllaLlqIlansdtssdlqvRqlAalyLKNlI
                       ++ L+q   +++P+F+++L+++l++  +s+d+++R l++l+LKN++
     fh13310   195    VQDKLKQ--LNQFPDFNNYLIFVLTRL-KSEDEPTRSLSGLILKNNV 238  

                   trhWnshrkqggyeqrwlslpeeekeqIknnllnllgs<-*
                   ++h+              s p+ + ++Ik+++ln +g+   
     fh13310   239 KAHYQ-------------SFPPPVADFIKQECLNNIGD    263  

PF02985.12.ls: domain 2 of 10, from 286 to 321: score 18.4, E = 0.024
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + +  ellp l++lln++d++  e A+ aL +++e     
     fh13310   286    QmWP-ELLPQLCNLLNSEDYNTCEGAFGALQKICEDS    321  

PF02985.12.ls: domain 3 of 10, from 331 to 367: score 13.0, E = 0.98
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++ l+ ++p +l+ +++ +p++R  A+ ++ +++      
     fh13310   331    NrPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDR    367  

PF02985.12.ls: domain 4 of 10, from 373 to 408: score 25.2, E = 0.00021
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++i  +++++l+ l  D+dpeVR+++++aL+ l+ev    
     fh13310   373    DnID-TFIEHLFALAVDDDPEVRKNVCRALVMLLEVR    408  

PF02985.12.fs: domain 7 of 11, from 553 to 589: score 26.5, E = 1.9e-06
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e++l++llpll  ll +p++ V+e+ +  Lga+ae +   
     fh13310   553    EeLLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGC    589  

PF02985.12.ls: domain 6 of 10, from 553 to 589: score 28.5, E = 2.3e-05
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      e++l++llpll  ll +p++ V+e+ +  Lga+ae +   
     fh13310   553    EeLLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGC    589  

PF00514.13.ls: domain 3 of 5, from 590 to 628: score 20.9, E = 0.0042
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                       +    ++ e+  +p+L+q+Ls+++  v+  A+w+Ls  a+   
     fh13310   590    MQGMVPYLPEL--IPHLIQCLSDKKALVRSIACWTLSRYAH    628  

PF02985.12.fs: domain 8 of 11, from 594 to 630: score 30.2, E = 1.7e-07
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       ++l+el+p+l+++l+D+ + VR  A+++L++ a  +   
     fh13310   594    VpYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWV    630  

PF02985.12.ls: domain 7 of 10, from 594 to 630: score 32.2, E = 1.7e-06
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       ++l+el+p+l+++l+D+ + VR  A+++L++ a  +   
     fh13310   594    VpYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWV    630  

PF02985.12.ls: domain 8 of 10, from 636 to 672: score 19.2, E = 0.014
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      + +l+ l+  llk + D + +V+eaA++a+++l e +   
     fh13310   636    DmHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEA    672  

PF02985.12.ls: domain 9 of 10, from 823 to 859: score 26.9, E = 6.4e-05
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        ++++++ ll+++++D+ peVR++++  Lg+l + +   
     fh13310   823    LvARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKAC    859  

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