# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh13337.fasta.nr -Q fh13337.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh13337, 397 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6819555 sequences Expectation_n fit: rho(ln(x))= 4.8398+/-0.000184; mu= 12.2371+/- 0.010 mean_var=70.3739+/-13.457, 0's: 35 Z-trim: 77 B-trim: 4 in 1/66 Lambda= 0.152886 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088272|dbj|BAD92583.1| thyroid hormone recept ( 397) 2717 608.3 8.3e-172 gi|29879|emb|CAA38749.1| thyriod hormone receptor ( 410) 2694 603.2 2.8e-170 gi|60834865|gb|AAX37114.1| unknown [synthetic cons ( 411) 2694 603.2 2.8e-170 gi|4138568|emb|CAA06701.1| thyroid hormone recepto ( 410) 2693 603.0 3.3e-170 gi|169743241|gb|ACA66242.1| thyroid hormone recept ( 410) 2687 601.7 8.3e-170 gi|825639|emb|CAA38899.1| thyroid hormone receptor ( 410) 2687 601.7 8.3e-170 gi|158261165|dbj|BAF82760.1| unnamed protein produ ( 410) 2685 601.2 1.1e-169 gi|55932|emb|CAA31237.1| c-erb-A thyroid hormone r ( 398) 2684 601.0 1.3e-169 gi|50388|emb|CAA30575.1| thyroid hormone receptor ( 410) 2684 601.0 1.3e-169 gi|2500920|sp|Q28570.1|THA_SHEEP Thyroid hormone r ( 410) 2682 600.6 1.8e-169 gi|50386|emb|CAA36241.1| unnamed protein product [ ( 410) 2678 599.7 3.3e-169 gi|207301|gb|AAA42238.1| thyroid hormone receptor ( 410) 2674 598.8 6.1e-169 gi|73966028|ref|XP_863256.1| PREDICTED: similar to ( 416) 2671 598.2 9.7e-169 gi|226130|prf||1411299A thyroid hormone receptor a ( 410) 2616 586.0 4.3e-165 gi|112806968|dbj|BAF03080.1| thyroid hormone recep ( 408) 2543 569.9 3e-160 gi|135710|sp|P04625.1|THA_CHICK Thyroid hormone re ( 408) 2515 563.8 2.2e-158 gi|13431914|sp|Q90382.1|THA_CAIMO Thyroid hormone ( 401) 2475 554.9 9.7e-156 gi|2582637|emb|CAA05339.1| alpha-thyroid hormone r ( 401) 2459 551.4 1.1e-154 gi|6094472|sp|O42295.2|THA_APTPA Thyroid hormone r ( 402) 2459 551.4 1.1e-154 gi|33413868|gb|AAO47435.1| thyroid hormone recepto ( 408) 2445 548.3 9.7e-154 gi|88697722|gb|ABD48806.1| thyroid hormone recepto ( 372) 2439 547.0 2.3e-153 gi|57015329|sp|O57606.2|THA_NECMA Thyroid hormone ( 408) 2439 547.0 2.4e-153 gi|226131|prf||1411299B thyroid hormone receptor a ( 492) 2426 544.2 2e-152 gi|2582814|emb|CAA05310.1| thyroid hormone recepto ( 401) 2422 543.2 3.2e-152 gi|6094473|sp|O42450.2|THA_PYGAD Thyroid hormone r ( 402) 2422 543.2 3.2e-152 gi|23243455|gb|AAH35137.1| THRA protein [Homo sapi ( 451) 2421 543.1 4.1e-152 gi|149723862|ref|XP_001500716.1| PREDICTED: simila ( 481) 2420 542.9 5e-152 gi|135705|sp|P10827.1|THA_HUMAN Thyroid hormone re ( 490) 2416 542.0 9.3e-152 gi|169743243|gb|ACA66243.1| thyroid hormone recept ( 451) 2415 541.7 1e-151 gi|90085555|dbj|BAE91518.1| unnamed protein produc ( 612) 2416 542.1 1.1e-151 gi|13124576|sp|O97716.1|THA_PIG Thyroid hormone re ( 506) 2415 541.8 1.1e-151 gi|73966026|ref|XP_851167.1| PREDICTED: similar to ( 511) 2415 541.8 1.1e-151 gi|149723860|ref|XP_001500679.1| PREDICTED: simila ( 520) 2415 541.8 1.1e-151 gi|54696118|gb|AAV38431.1| thyroid hormone recepto ( 452) 2414 541.5 1.2e-151 gi|50392|emb|CAA30577.1| thyroid hormone receptor ( 413) 2411 540.8 1.8e-151 gi|50080136|dbj|BAD27474.1| thyroid hormone recept ( 409) 2409 540.4 2.4e-151 gi|6018474|emb|CAB57886.1| thyroid hormone recepto ( 490) 2409 540.4 2.7e-151 gi|60813032|gb|AAX36243.1| thyroid hormone recepto ( 451) 2407 540.0 3.5e-151 gi|50390|emb|CAA30576.1| thyroid hormone receptor ( 452) 2406 539.7 4.1e-151 gi|52001262|sp|P63059.1|THA_RAT Thyroid hormone re ( 492) 2406 539.8 4.3e-151 gi|149054131|gb|EDM05948.1| thyroid hormone recept ( 492) 2406 539.8 4.3e-151 gi|28386179|gb|AAH46795.1| Thra protein [Mus muscu ( 492) 2406 539.8 4.3e-151 gi|31209|emb|CAA68539.1| unnamed protein product [ ( 490) 2405 539.6 5e-151 gi|92096602|gb|AAI14726.1| Thyroid hormone recepto ( 511) 2404 539.4 6e-151 gi|189514197|gb|ACE07028.1| thyroid hormone recept ( 418) 2399 538.2 1.1e-150 gi|204048|gb|AAA41121.1| c-erbA-alpha-2-related pr ( 492) 2395 537.4 2.3e-150 gi|586091|sp|Q02777.1|THA_RANCA Thyroid hormone re ( 418) 2390 536.2 4.4e-150 gi|189526364|ref|XP_001921013.1| PREDICTED: thyroi ( 531) 2387 535.6 8.3e-150 gi|42794038|dbj|BAD11772.1| thyroid hormone recept ( 411) 2382 534.4 1.5e-149 gi|135707|sp|P15204.2|THAA_XENLA Thyroid hormone r ( 418) 2381 534.2 1.7e-149 >>gi|62088272|dbj|BAD92583.1| thyroid hormone receptor, (397 aa) initn: 2717 init1: 2717 opt: 2717 Z-score: 3239.7 bits: 608.3 E(): 8.3e-172 Smith-Waterman score: 2717; 100.000% identity (100.000% similar) in 397 aa overlap (1-397:1-397) 10 20 30 40 50 60 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGC 10 20 30 40 50 60 70 80 90 100 110 120 fh1333 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVA 70 80 90 100 110 120 130 140 150 160 170 180 fh1333 KRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLP 130 140 150 160 170 180 190 200 210 220 230 240 fh1333 DDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKG 190 200 210 220 230 240 250 260 270 280 290 300 fh1333 CCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 CCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDD 250 260 270 280 290 300 310 320 330 340 350 360 fh1333 TEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTD 310 320 330 340 350 360 370 380 390 fh1333 LRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV ::::::::::::::::::::::::::::::::::::: gi|620 LRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 >>gi|29879|emb|CAA38749.1| thyriod hormone receptor alph (410 aa) initn: 2694 init1: 2694 opt: 2694 Z-score: 3212.1 bits: 603.2 E(): 2.8e-170 Smith-Waterman score: 2694; 99.747% identity (99.747% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : :::::::::::::::::::::::::::::::::::::::::::: gi|298 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|298 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|298 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|298 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|298 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|298 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|298 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 >>gi|60834865|gb|AAX37114.1| unknown [synthetic construc (411 aa) initn: 2694 init1: 2694 opt: 2694 Z-score: 3212.1 bits: 603.2 E(): 2.8e-170 Smith-Waterman score: 2694; 99.747% identity (99.747% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : :::::::::::::::::::::::::::::::::::::::::::: gi|608 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEVD 370 380 390 400 410 >>gi|4138568|emb|CAA06701.1| thyroid hormone receptor al (410 aa) initn: 2693 init1: 2693 opt: 2693 Z-score: 3210.9 bits: 603.0 E(): 3.3e-170 Smith-Waterman score: 2693; 99.495% identity (99.747% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : :::::::::::::::::::::::::::::::::::::::::::: gi|413 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|413 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|413 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|413 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|413 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|413 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|413 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 >>gi|169743241|gb|ACA66242.1| thyroid hormone receptor a (410 aa) initn: 2687 init1: 2687 opt: 2687 Z-score: 3203.7 bits: 601.7 E(): 8.3e-170 Smith-Waterman score: 2687; 99.242% identity (99.495% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : :::::::::::::::::::::::::::::::::::::::::::: gi|169 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|169 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::: ::::::::::::::::::::::::::::::::::::::: gi|169 PHFWPKLLMKXTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 >>gi|825639|emb|CAA38899.1| thyroid hormone receptor alp (410 aa) initn: 2687 init1: 2687 opt: 2687 Z-score: 3203.7 bits: 601.7 E(): 8.3e-170 Smith-Waterman score: 2687; 99.495% identity (99.495% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : :::::::::::::::::::::::::::::::::::::::::::: gi|825 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|825 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKRAQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 >>gi|158261165|dbj|BAF82760.1| unnamed protein product [ (410 aa) initn: 2685 init1: 2685 opt: 2685 Z-score: 3201.4 bits: 601.2 E(): 1.1e-169 Smith-Waterman score: 2685; 99.495% identity (99.495% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : :::::::::::::::::::::::::::::::::::::::::::: gi|158 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: gi|158 TGYHYRCITCEGCKGFFRRTIQKNPHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 >>gi|55932|emb|CAA31237.1| c-erb-A thyroid hormone recep (398 aa) initn: 2684 init1: 2684 opt: 2684 Z-score: 3200.3 bits: 601.0 E(): 1.3e-169 Smith-Waterman score: 2684; 98.990% identity (99.495% similar) in 396 aa overlap (2-397:3-398) 10 20 30 40 50 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEG : ::::::::::::::::: ::.::::::::::::::::::::::::::::::::::: gi|559 DPEENSARSPDGKRKRKNGQCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEG 10 20 30 40 50 60 60 70 80 90 100 110 fh1333 CKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 CKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRV 70 80 90 100 110 120 120 130 140 150 160 170 fh1333 AKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFL :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|559 AKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFL 130 140 150 160 170 180 180 190 200 210 220 230 fh1333 PDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 PDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLK 190 200 210 220 230 240 240 250 260 270 280 290 fh1333 GCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 GCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLD 250 260 270 280 290 300 300 310 320 330 340 350 fh1333 DTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 DTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVT 310 320 330 340 350 360 360 370 380 390 fh1333 DLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::: gi|559 DLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 >>gi|50388|emb|CAA30575.1| thyroid hormone receptor [Mus (410 aa) initn: 2684 init1: 2684 opt: 2684 Z-score: 3200.2 bits: 601.0 E(): 1.3e-169 Smith-Waterman score: 2684; 98.990% identity (99.495% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : ::::::::::::::::: ::.::::::::::::::::::::::: gi|503 MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCPLKSSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|503 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 >>gi|2500920|sp|Q28570.1|THA_SHEEP Thyroid hormone recep (410 aa) initn: 2682 init1: 2682 opt: 2682 Z-score: 3197.8 bits: 600.6 E(): 1.8e-169 Smith-Waterman score: 2682; 98.990% identity (99.747% similar) in 396 aa overlap (2-397:15-410) 10 20 30 40 fh1333 SEWNSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA : .:.::::::::::::::::::::::::::::::::::::::::: gi|250 MEQKPSKVECGSDPEESSTRSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA 10 20 30 40 50 60 50 60 70 80 90 100 fh1333 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM 70 80 90 100 110 120 110 120 130 140 150 160 fh1333 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|250 AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNA 130 140 150 160 170 180 170 180 190 200 210 220 fh1333 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS 190 200 210 220 230 240 230 240 250 260 270 280 fh1333 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF 250 260 270 280 290 300 290 300 310 320 330 340 fh1333 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI 310 320 330 340 350 360 350 360 370 380 390 fh1333 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV :::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 PHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV 370 380 390 400 410 397 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 17:01:24 2008 done: Sat Aug 9 17:03:54 2008 Total Scan time: 806.970 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]