hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-17035584/chunk_1/iprscan-20080809-17035584.nocrc
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Query sequence: fh13337
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00105.9.fs  Zinc finger, C4 type (two domains)        178.6    6.2e-53   1
PF00105.9.ls  Zinc finger, C4 type (two domains)        180.6    3.7e-51   1
PF00104.20.fs Ligand-binding domain of nuclear hormon   150.0    1.4e-44   1
PF00104.20.ls Ligand-binding domain of nuclear hormon   151.9    1.6e-42   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00105.9.fs    1/1      38   115 ..     1    77 []   178.6  6.2e-53
PF00105.9.ls    1/1      38   115 ..     1    77 []   180.6  3.7e-51
PF00104.20.fs   1/1     210   391 ..     1   198 []   150.0  1.4e-44
PF00104.20.ls   1/1     210   391 ..     1   198 []   151.9  1.6e-42

Alignments of top-scoring domains:
PF00105.9.fs: domain 1 of 1, from 38 to 115: score 178.6, E = 6.2e-53
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlv.iYsCkrnkdC
                      e+C+VCGDkA+GyHY ++TCEGCKGFFrR+iqknl+++YsCk++ +C
     fh13337    38    EQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHpTYSCKYDSCC 84   

                   vIdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   vIdK++Rn+CQ CR+kKC++VGM ++ V  +   
     fh13337    85 VIDKITRNQCQLCRFKKCIAVGMAMDLVLDD    115  

PF00105.9.ls: domain 1 of 1, from 38 to 115: score 180.6, E = 3.7e-51
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlv.iYsCkrnkdC
                      e+C+VCGDkA+GyHY ++TCEGCKGFFrR+iqknl+++YsCk++ +C
     fh13337    38    EQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHpTYSCKYDSCC 84   

                   vIdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   vIdK++Rn+CQ CR+kKC++VGM ++ V  +   
     fh13337    85 VIDKITRNQCQLCRFKKCIAVGMAMDLVLDD    115  

PF00104.20.fs: domain 1 of 1, from 210 to 391: score 150.0, E = 1.4e-44
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      + +++++v++aKklP FseL+ eDQiiLLk++++e++ Lr+a r+++
     fh13337   210    TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP 256  

                   ek.elllfpdggdifeeqlr.ggl.elvrilqelv.plreLkldeeEyal
                   e ++l+l   +    +eql++ggl+ + ++++el ++l + +ld++E al
     fh13337   257 ESdTLTLSGEMAVK-REQLKnGGLgVVSDAIFELGkSLSAFNLDDTEVAL 305  

                   LkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspqd
                   L A +L ++d++g  l + +++ek qe yl a  +Y+ +++   ++    
     fh13337   306 LQAVLLMSTDRSG--LLCVDKIEKSQEAYLLAFEHYVNHRK---HN---I 347  

                   prgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLldv
                   p     ++kLL++ + lr +    + + ++++k+   + + + +ppL+  
     fh13337   348 P--H-FWPKLLMKVTDLRMIG-ACHASRFLHMKV---ECPTELFPPLF-- 388  

                   LfkEi<-*
                     +E+   
     fh13337   389 --LEV    391  

PF00104.20.ls: domain 1 of 1, from 210 to 391: score 151.9, E = 1.6e-42
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      + +++++v++aKklP FseL+ eDQiiLLk++++e++ Lr+a r+++
     fh13337   210    TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP 256  

                   ek.elllfpdggdifeeqlr.ggl.elvrilqelv.plreLkldeeEyal
                   e ++l+l   +    +eql++ggl+ + ++++el ++l + +ld++E al
     fh13337   257 ESdTLTLSGEMAVK-REQLKnGGLgVVSDAIFELGkSLSAFNLDDTEVAL 305  

                   LkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspqd
                   L A +L ++d++g  l + +++ek qe yl a  +Y+ +++   ++    
     fh13337   306 LQAVLLMSTDRSG--LLCVDKIEKSQEAYLLAFEHYVNHRK---HN---I 347  

                   prgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLldv
                   p     ++kLL++ + lr +    + + ++++k+   + + + +ppL+  
     fh13337   348 P--H-FWPKLLMKVTDLRMIG-ACHASRFLHMKV---ECPTELFPPLF-- 388  

                   LfkEi<-*
                     +E+   
     fh13337   389 --LEV    391  

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