hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-17215852/chunk_1/iprscan-20080809-17215852.nocrc
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Query sequence: fh13524
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00249.21.fs   Myb-like DNA-binding domain              42.3    1.4e-10   1
PF00249.21.ls   Myb-like DNA-binding domain              44.0    4.7e-10   1
PF00320.17.fs   GATA zinc finger                         32.6    8.7e-09   1
PF00320.17.ls   GATA zinc finger                         34.6    3.2e-07   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00249.21.fs     1/1      77   123 ..     1    65 []    42.3  1.4e-10
PF00249.21.ls     1/1      77   123 ..     1    65 []    44.0  4.7e-10
PF00320.17.fs     1/1     185   222 ..     1    36 []    32.6  8.7e-09
PF00320.17.ls     1/1     185   222 ..     1    36 []    34.6  3.2e-07

Alignments of top-scoring domains:
PF00249.21.fs: domain 1 of 1, from 77 to 123: score 42.3, E = 1.4e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++W+a E +l++ea+ek+Gk+           +  I + +      
     fh13524    77    MEEWSASEANLFEEALEKYGKD-----------FTDIQQDF------ 106  

                   nvlgrtaeqcklryykyk<-*
                    ++ ++  +++++yy++k   
     fh13524   107 -LPWKSLTSIIEYYYMWK    123  

PF00249.21.ls: domain 1 of 1, from 77 to 123: score 44.0, E = 4.7e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++W+a E +l++ea+ek+Gk+           +  I + +      
     fh13524    77    MEEWSASEANLFEEALEKYGKD-----------FTDIQQDF------ 106  

                   nvlgrtaeqcklryykyk<-*
                    ++ ++  +++++yy++k   
     fh13524   107 -LPWKSLTSIIEYYYMWK    123  

PF00320.17.fs: domain 1 of 1, from 185 to 222: score 32.6, E = 8.7e-09
                   *->CsnCgttkTplWRrgp..dGnrtLCNACGLyykkhgvk<-*
                      C++C tt++ +W +++++++++ LC +C+ y+kk+g +   
     fh13524   185    CESCYTTQSYQWYSWGppNMQCRLCASCWTYWKKYGGL    222  

PF00320.17.ls: domain 1 of 1, from 185 to 222: score 34.6, E = 3.2e-07
                   *->CsnCgttkTplWRrgp..dGnrtLCNACGLyykkhgvk<-*
                      C++C tt++ +W +++++++++ LC +C+ y+kk+g +   
     fh13524   185    CESCYTTQSYQWYSWGppNMQCRLCASCWTYWKKYGGL    222  

//