hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-17345486/chunk_1/iprscan-20080809-17345486.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13874 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 278.4 1.3e-80 7 PF07679.6.ls Immunoglobulin I-set domain 239.4 6.9e-69 7 PF00047.15.ls Immunoglobulin domain 234.8 1.7e-67 7 PF00047.15.fs Immunoglobulin domain 221.8 1.4e-63 7 PF07686.7.fs Immunoglobulin V-set domain 59.6 2.7e-16 7 PF07686.7.ls Immunoglobulin V-set domain 39.7 9.4e-09 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/7 72 161 .. 1 96 [] 4.2 0.0005 PF00047.15.fs 1/7 86 143 .. 1 65 [] 34.7 9.3e-09 PF00047.15.ls 1/7 86 143 .. 1 65 [] 36.5 8.6e-08 PF07679.6.fs 2/7 168 257 .. 1 96 [] 43.4 4.8e-12 PF07679.6.ls 2/7 168 257 .. 1 96 [] 45.3 1.9e-10 PF00047.15.ls 2/7 183 242 .. 1 65 [] 48.3 2.4e-11 PF00047.15.fs 2/7 183 242 .. 1 65 [] 46.4 5.5e-12 PF07679.6.ls 3/7 265 359 .. 1 96 [] 4.0 0.00052 PF07679.6.fs 3/7 265 342 .. 1 80 [. 22.4 6.4e-06 PF00047.15.fs 3/7 279 343 .. 1 65 [] 20.4 7.8e-05 PF00047.15.ls 3/7 279 343 .. 1 65 [] 22.3 0.0016 PF07679.6.ls 4/7 371 448 .. 1 96 [] 25.6 7.9e-06 PF00047.15.ls 4/7 376 433 .. 1 65 [] 31.4 3e-06 PF00047.15.fs 4/7 376 433 .. 1 65 [] 29.5 2.4e-07 PF07679.6.fs 4/7 387 448 .. 25 96 .] 43.9 3.4e-12 PF07679.6.fs 5/7 452 538 .. 1 96 [] 50.5 4e-14 PF07679.6.ls 5/7 452 538 .. 1 96 [] 52.4 1.4e-12 PF00047.15.ls 5/7 466 523 .. 1 65 [] 22.0 0.002 PF00047.15.fs 5/7 466 523 .. 1 65 [] 20.1 8.9e-05 PF07679.6.ls 6/7 542 628 .. 1 96 [] 56.4 8.6e-14 PF07679.6.fs 6/7 542 628 .. 1 96 [] 54.6 2.6e-15 PF00047.15.ls 6/7 557 612 .. 1 65 [] 43.2 8.4e-10 PF00047.15.fs 6/7 557 612 .. 1 65 [] 41.4 1.4e-10 PF07686.7.ls 5/5 631 722 .. 1 141 [] 14.1 0.0018 PF07679.6.fs 7/7 632 709 .. 1 84 [. 54.3 3.1e-15 PF07679.6.ls 7/7 632 721 .. 1 96 [] 51.6 2.5e-12 PF00047.15.ls 7/7 646 706 .. 1 65 [] 31.2 3.3e-06 PF00047.15.fs 7/7 646 706 .. 1 65 [] 29.3 2.7e-07 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 7, from 72 to 161: score 4.2, E = 0.0005 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp +F+++p+++ + G +a + C+V+ + V W+ dG p++ fh13874 72 IVFIKQPSSQDALQGRRALLRCEVEAPGPVHVYWLLDGAPVQD---- 114 sdrfkvtydgGsgtytLtIsnvqp.dDsGkYtCvAtNs.aGea..easae + + g ++L + v++ DsG+ CvA+ Ge ++a a+ fh13874 115 --TERRFAQG----SSLSFAAVDRlQDSGTFQCVARDDvTGEEarSANAS 158 LtV<-* ++ fh13874 159 FNI 161 PF00047.15.fs: domain 1 of 7, from 86 to 143: score 34.7, E = 9.3e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G ++ L+C+v ++p +v+v+Wl +g ++++ ++ ++ fh13874 86 GRRALLRCEV--EAPGPVHVYWLLDGApVQdTERRFAQGSS------ 124 tsLtitnvtpe.DggtYtCvv<-* L++ +v++ +D+gt+ Cv+ fh13874 125 --LSFAAVDRLqDSGTFQCVA 143 PF00047.15.ls: domain 1 of 7, from 86 to 143: score 36.5, E = 8.6e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G ++ L+C+v ++p +v+v+Wl +g ++++ ++ ++ fh13874 86 GRRALLRCEV--EAPGPVHVYWLLDGApVQdTERRFAQGSS------ 124 tsLtitnvtpe.DggtYtCvv<-* L++ +v++ +D+gt+ Cv+ fh13874 125 --LSFAAVDRLqDSGTFQCVA 143 PF07679.6.fs: domain 2 of 7, from 168 to 257: score 43.4, E = 4.8e-12 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P+ +++p + +e+q +++ C+++G+P Pt +Wf+dG pls fh13874 168 PVVLKHPaSEAEIQPQTQVTLRCHIDGHPRPTYQWFRDGTPLSD--- 211 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV + + v+ ++ Lt + + p+ sG+Y+C A +G+a +s + t fh13874 212 GQSNHTVSSKE----RNLTLRPAGPEHSGLYSCCAHSAFGQACSSQNFTL 257 <-* fh13874 - - PF07679.6.ls: domain 2 of 7, from 168 to 257: score 45.3, E = 1.9e-10 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P+ +++p + +e+q +++ C+++G+P Pt +Wf+dG pls fh13874 168 PVVLKHPaSEAEIQPQTQVTLRCHIDGHPRPTYQWFRDGTPLSD--- 211 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV + + v+ ++ Lt + + p+ sG+Y+C A +G+a +s + t fh13874 212 GQSNHTVSSKE----RNLTLRPAGPEHSGLYSCCAHSAFGQACSSQNFTL 257 <-* fh13874 - - PF00047.15.ls: domain 2 of 7, from 183 to 242: score 48.3, E = 2.4e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq vtL+C+ g+p +t++W+r+g++l +g++ +++ ++ + fh13874 183 QTQVTLRCHI--DGHPRPTYQWFRDGTpLSdGQSNHTVSSKERN--- 224 tsLtitnvtpeDggtYtCvv<-* Lt++++ pe++g Y+C + fh13874 225 --LTLRPAGPEHSGLYSCCA 242 PF00047.15.fs: domain 2 of 7, from 183 to 242: score 46.4, E = 5.5e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq vtL+C+ g+p +t++W+r+g++l +g++ +++ ++ + fh13874 183 QTQVTLRCHI--DGHPRPTYQWFRDGTpLSdGQSNHTVSSKERN--- 224 tsLtitnvtpeDggtYtCvv<-* Lt++++ pe++g Y+C + fh13874 225 --LTLRPAGPEHSGLYSCCA 242 PF07679.6.ls: domain 3 of 7, from 265 to 359: score 4.0, E = 0.00052 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssv.. + + p+dv+V+ e a f C+ + P+P+ +W+ + p+++ ++ fh13874 265 ARVVLAPQDVVVARYEEAMFHCQFSAQPPPSLQWLFEdETPITNRsr 311 .l.lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeas + +l+ r v ++g +L +v p+ +G+Y+C+ + ++ + fh13874 312 pPhLR--RATVFANG-----SLLLTQVRPRNAGIYRCIGQGQrGPPIILE 354 aeLtV<-* a+L+ fh13874 355 ATLHL 359 PF07679.6.fs: domain 3 of 7, from 265 to 342: score 22.4, E = 6.4e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssv.. + + p+dv+V+ e a f C+ + P+P+ +W+ + p+++ ++ fh13874 265 ARVVLAPQDVVVARYEEAMFHCQFSAQPPPSLQWLFEdETPITNRsr 311 .l.lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCv<-* + +l+ r v ++g +L +v p+ +G+Y+C+ fh13874 312 pPhLR--RATVFANG-----SLLLTQVRPRNAGIYRCI 342 PF00047.15.fs: domain 3 of 7, from 279 to 343: score 20.4, E = 7.8e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e +++ C+ ++ p+++++Wl+++ + ++ + + ++ + + + fh13874 279 YEEAMFHCQF--SAQPPPSLQWLFEDEtPItNRSRPPHLRRATVFAN 323 tsLtitnvtpeDggtYtCvv<-* sL +t+v+p +g+Y+C fh13874 324 GSLLLTQVRPRNAGIYRCIG 343 PF00047.15.ls: domain 3 of 7, from 279 to 343: score 22.3, E = 0.0016 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e +++ C+ ++ p+++++Wl+++ + ++ + + ++ + + + fh13874 279 YEEAMFHCQF--SAQPPPSLQWLFEDEtPItNRSRPPHLRRATVFAN 323 tsLtitnvtpeDggtYtCvv<-* sL +t+v+p +g+Y+C fh13874 324 GSLLLTQVRPRNAGIYRCIG 343 PF07679.6.ls: domain 4 of 7, from 371 to 448: score 25.6, E = 7.9e-06 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll +Ft +++v++ + G PeP+V W + G l+ fh13874 371 RVFTAGSeERVTCLPPK---------GLPEPSVWWEHAGVRLPT--- 405 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV + +v +g + L+ n+ +D+G+YtC A N aG+ +++ tV fh13874 406 ---HGRVYQKG----HELVLANIAESDAGVYTCHAANLAGQRRQDVNITV 448 <-* fh13874 - - PF00047.15.ls: domain 4 of 7, from 376 to 433: score 31.4, E = 3e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + tC g p+++v W ++g +l+++ +v++ ++ fh13874 376 GSEERVTCLPP-KGLPEPSVWWEHAGVrLPtHGRVYQKGHE------ 415 tsLtitnvtpeDggtYtCvv<-* L++ n+ ++D+g+YtC++ fh13874 416 --LVLANIAESDAGVYTCHA 433 PF00047.15.fs: domain 4 of 7, from 376 to 433: score 29.5, E = 2.4e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + tC g p+++v W ++g +l+++ +v++ ++ fh13874 376 GSEERVTCLPP-KGLPEPSVWWEHAGVrLPtHGRVYQKGHE------ 415 tsLtitnvtpeDggtYtCvv<-* L++ n+ ++D+g+YtC++ fh13874 416 --LVLANIAESDAGVYTCHA 433 PF07679.6.fs: domain 4 of 7, from 387 to 448: score 43.9, E = 3.4e-12 *->tGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqp +G PeP+V W + G l+ + +v +g + L+ n+ fh13874 387 KGLPEPSVWWEHAGVRLPT------HGRVYQKG----HELVLANIAE 423 dDsGkYtCvAtNsaGeaeasaeLtV<-* +D+G+YtC A N aG+ +++ tV fh13874 424 SDAGVYTCHAANLAGQRRQDVNITV 448 PF07679.6.fs: domain 5 of 7, from 452 to 538: score 50.5, E = 4e-14 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ ++kp+d + eG++ ++C + tP+PtV W+++ +s+ fh13874 452 PSWLKKPQDSQLEEGKPGYLDCLTQATPKPTVVWYRNQMLISE---- 494 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++rf v +g tL+I+ v+ D Y+C + +aG+ ea a+++V fh13874 495 DSRFEVFKNG-----TLRINSVEVYDGTWYRCMSSTPAGSIEAQARVQV 538 -* fh13874 - - PF07679.6.ls: domain 5 of 7, from 452 to 538: score 52.4, E = 1.4e-12 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ ++kp+d + eG++ ++C + tP+PtV W+++ +s+ fh13874 452 PSWLKKPQDSQLEEGKPGYLDCLTQATPKPTVVWYRNQMLISE---- 494 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++rf v +g tL+I+ v+ D Y+C + +aG+ ea a+++V fh13874 495 DSRFEVFKNG-----TLRINSVEVYDGTWYRCMSSTPAGSIEAQARVQV 538 -* fh13874 - - PF00047.15.ls: domain 5 of 7, from 466 to 523: score 22.0, E = 0.002 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++ L C + ++p +tv W+rn+ + ++ + ++ n++ fh13874 466 GKPGYLDCLT--QATPKPTVVWYRNQMlISeDSRFEVFKNGT----- 505 tsLtitnvtpeDggtYtCvv<-* L+i++v+ Dg+ Y+C+ fh13874 506 --LRINSVEVYDGTWYRCMS 523 PF00047.15.fs: domain 5 of 7, from 466 to 523: score 20.1, E = 8.9e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++ L C + ++p +tv W+rn+ + ++ + ++ n++ fh13874 466 GKPGYLDCLT--QATPKPTVVWYRNQMlISeDSRFEVFKNGT----- 505 tsLtitnvtpeDggtYtCvv<-* L+i++v+ Dg+ Y+C+ fh13874 506 --LRINSVEVYDGTWYRCMS 523 PF07679.6.ls: domain 6 of 7, from 542 to 628: score 56.4, E = 8.6e-14 *->PkFtqkpkdveVqe.GesarfeCkVtGtPePtVsWfKd.Gqplssvl kFt +p++++++e + a+ C +tG +Pt+ W + +G+ l++ fh13874 542 LKFTPPPQPQQCMEfDKEATVPCSATGREKPTIKWERAdGSSLPE-- 586 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeL ++ g tL + +v++dD+G YtC+A+N + G+ a+++L fh13874 587 -----WVTDNAG-----TLHFARVTRDDAGNYTCIASNGpQGQIRAHVQL 626 tV<-* tV fh13874 627 TV 628 PF07679.6.fs: domain 6 of 7, from 542 to 628: score 54.6, E = 2.6e-15 *->PkFtqkpkdveVqe.GesarfeCkVtGtPePtVsWfKd.Gqplssvl kFt +p++++++e + a+ C +tG +Pt+ W + +G+ l++ fh13874 542 LKFTPPPQPQQCMEfDKEATVPCSATGREKPTIKWERAdGSSLPE-- 586 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeL ++ g tL + +v++dD+G YtC+A+N + G+ a+++L fh13874 587 -----WVTDNAG-----TLHFARVTRDDAGNYTCIASNGpQGQIRAHVQL 626 tV<-* tV fh13874 627 TV 628 PF00047.15.ls: domain 6 of 7, from 557 to 612: score 43.2, E = 8.4e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + +t +Cs+ +g + +t+ W r++++ ++++++ + fh13874 557 DKEATVPCSA--TGREKPTIKWERADGsSLpEWVTDNAGT------- 594 tsLtitnvtpeDggtYtCvv<-* L++ +vt++D+g+YtC + fh13874 595 --LHFARVTRDDAGNYTCIA 612 PF00047.15.fs: domain 6 of 7, from 557 to 612: score 41.4, E = 1.4e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + +t +Cs+ +g + +t+ W r++++ ++++++ + fh13874 557 DKEATVPCSA--TGREKPTIKWERADGsSLpEWVTDNAGT------- 594 tsLtitnvtpeDggtYtCvv<-* L++ +vt++D+g+YtC + fh13874 595 --LHFARVTRDDAGNYTCIA 612 PF07686.7.ls: domain 5 of 5, from 631 to 722: score 14.1, E = 0.0018 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ p+ tv +G +++L+C + +d+ fh13874 631 FITFKV-EPE------------RTTVYQGHTALLQCEAQ---GDP-- 659 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls p+ +++++ + + r +++ fh13874 660 ------------KPL-------------IQWKGKDRILDPTKLGPRMHIF 684 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +n+s L I+++ ++DsG Y+C ns + +++ L V+ fh13874 685 QNGS-----LVIHDVAPEDSGRYTCIAGNS-CNIKHTEAPLYVV 722 PF07679.6.fs: domain 7 of 7, from 632 to 709: score 54.3, E = 3.1e-15 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp +F +p++ +V G +a ++C+++G+P+P ++W+ +++ l + fh13874 632 ITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQWKGKDRILDP-TKL 677 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs<-* ++r+++ +g +L+I +v p+DsG YtC+A Ns fh13874 678 GPRMHIFQNG-----SLVIHDVAPEDSGRYTCIAGNS 709 PF07679.6.ls: domain 7 of 7, from 632 to 721: score 51.6, E = 2.5e-12 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp +F +p++ +V G +a ++C+++G+P+P ++W+ +++ l + fh13874 632 ITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQWKGKDRILDP-TKL 677 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++r+++ +g +L+I +v p+DsG YtC+A Ns ++a L V fh13874 678 GPRMHIFQNG-----SLVIHDVAPEDSGRYTCIAGNSCNIKHTEAPLYV 721 -* fh13874 - - PF00047.15.ls: domain 7 of 7, from 646 to 706: score 31.2, E = 3.3e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+C++ g+p + ++W+ + l + l+ + +++ fh13874 646 GHTALLQCEA--QGDPKPLIQWKGKDRiLDpTKLGPRMHIFQNGS-- 688 tsLtitnvtpeDggtYtCvv<-* L+i++v peD+g YtC + fh13874 689 --LVIHDVAPEDSGRYTCIA 706 PF00047.15.fs: domain 7 of 7, from 646 to 706: score 29.3, E = 2.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+C++ g+p + ++W+ + l + l+ + +++ fh13874 646 GHTALLQCEA--QGDPKPLIQWKGKDRiLDpTKLGPRMHIFQNGS-- 688 tsLtitnvtpeDggtYtCvv<-* L+i++v peD+g YtC + fh13874 689 --LVIHDVAPEDSGRYTCIA 706 //