hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-17345486/chunk_1/iprscan-20080809-17345486.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh13874 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00408 279.7 2.2e-79 7 SM00409 257.3 1.3e-72 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/7 78 162 .. 1 58 [] 24.6 0.014 SM00408 1/7 84 148 .. 1 56 [] 36.6 3.3e-06 SM00409 2/7 175 260 .. 1 58 [] 35.2 8.7e-06 SM00408 2/7 181 247 .. 1 56 [] 55.6 6.5e-12 SM00409 3/7 271 360 .. 1 58 [] 30.7 0.0002 SM00408 3/7 277 348 .. 1 56 [] 24.9 0.011 SM00409 4/7 368 449 .. 1 58 [] 30.7 0.0002 SM00408 4/7 374 438 .. 1 56 [] 34.4 1.6e-05 SM00409 5/7 458 539 .. 1 58 [] 37.4 2e-06 SM00408 5/7 464 528 .. 1 56 [] 21.6 0.031 SM00409 6/7 548 629 .. 1 58 [] 45.1 9.1e-09 SM00408 6/7 555 617 .. 1 56 [] 50.9 1.7e-10 SM00409 7/7 638 722 .. 1 58 [] 53.6 2.6e-11 SM00408 7/7 644 711 .. 1 56 [] 55.7 6.1e-12 Alignments of top-scoring domains: SM00409: domain 1 of 7, from 78 to 162: score 24.6, E = 0.014 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ + G ++ L+C+++ +++ +++W+ ++ + +++ ++ ++++ fh13874 78 PSsQDALQGRRALLRCeVEapgpvHVYWLldgapvqdterrfaqgss 124 LtI.nv.tpeDsesgGtYtCaat....sgsasseqgttLtVl<-* L + v++++Ds Gt++C+a+++ ++ +a s ++ ++ fh13874 125 LSFaAVdRLQDS---GTFQCVARddvtGEEARS-ANASFNIK 162 SM00408: domain 1 of 7, from 84 to 148: score 36.6, E = 3.3e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv l+G+ + L+C++++ + Wl +g p+++++++ gs+L++ v fh13874 84 LQGRRALLRCEVEAPGPVHVYWLLdGAPVQdterrfaQGSSLSFAAV 130 s.leDsGlYtCvArNsvg<-* +l DsG+ +CvAr v fh13874 131 DrLQDSGTFQCVARDDVT 148 SM00409: domain 2 of 7, from 175 to 260: score 35.2, E = 8.7e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ + ++ vtL+C++ +++ +t++W++++++ ++++++++ +++ fh13874 175 ASeAEIQPQTQVTLRChIDghprpTYQWFrdgtplsdgqsnhtvssk 221 ...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* ++Lt++++ pe+s G Y C a++ + + s+ ++tL++ fh13874 222 ernLTLrPAGPEHS---GLYSCCAHsafgQACSSQ--NFTLSIA 260 SM00408: domain 2 of 7, from 181 to 247: score 55.6, E = 6.5e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti ++ ++VtL+C+ +g p p+ +W+++g+pl++++++++ ++++ Lt+ fh13874 181 QPQTQVTLRCHIDGHPRPTYQWFRdGTPLSdgqsnhtvssKERNLTL 227 knvsleDsGlYtCvArNsvg<-* +++ +e+sGlY+C A ++ g fh13874 228 RPAGPEHSGLYSCCAHSAFG 247 SM00409: domain 3 of 7, from 271 to 360: score 30.7, E = 0.0002 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++v+v + e + ++C++s ++++++W+ + ++ ++++++++ ++ fh13874 271 PQdVVVARYEEAMFHCqFSaqpppSLQWLfedetpitnrsrpphlrr 317 ........LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<- + +++L +++v+p ++ G+Y+C ++ ++ + ++tL+ fh13874 318 atvfangsLLLtQVRPRNA---GIYRCIGQgqrGPPIIL--EATLHLA 360 * fh13874 - - SM00408: domain 3 of 7, from 277 to 348: score 24.9, E = 0.011 *->leGqsVtLtCpasgdpvpnItWlk..gkplp..............sg + + + C s+ p p+ +Wl+++++p+ +++++++ ++ + + fh13874 277 ARYEEAMFHCQFSAQPPPSLQWLFedETPITnrsrpphlrratvfAN 323 stLtiknvsleDsGlYtCvArNsvg<-* ++L ++ v++ +G+Y+C++++ g fh13874 324 GSLLLTQVRPRNAGIYRCIGQGQRG 348 SM00409: domain 4 of 7, from 368 to 449: score 30.7, E = 0.0002 *->pp.vtvkeGesvtLtC.as......titWy................. ++ + +G+ + tC +++ + ++++W + + + +++++ ++++ fh13874 368 FEpRVFTAGSEERVTClPPkglpepSVWWEhagvrlpthgrvyqkgh 414 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L++ n+ ++D+ G+YtC a + +g+ + +++tV fh13874 415 eLVLaNIAESDA---GVYTCHAAnlAGQRRQ--DVNITVA 449 SM00408: domain 4 of 7, from 374 to 438: score 34.4, E = 1.6e-05 *->leGqsVtLtCp.asgdpvpnItWlk.gkplp.......sgstLtikn G + tC + g p+p++ W + g +lp++++ ++g +L + n fh13874 374 TAGSEERVTCLpPKGLPEPSVWWEHaGVRLPthgrvyqKGHELVLAN 420 vsleDsGlYtCvArNsvg<-* ++++D+G+YtC A N +g fh13874 421 IAESDAGVYTCHAANLAG 438 SM00409: domain 5 of 7, from 458 to 539: score 37.4, E = 2e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++ eG + L C + ++++t+ Wy+++ + +++ +++ fh13874 458 PQdSQLEEGKPGYLDClTQatpkpTVVWYrnqmlisedsrfevfkng 504 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I++v++ D Y+C+ ++++gs+++ ++++Vl fh13874 505 tLRInSVEVYDG---TWYRCMSStpAGSIEA--QARVQVL 539 SM00408: domain 5 of 7, from 464 to 528: score 21.6, E = 0.031 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +eG + L C + p p++ W+++ ++++++ + +++tL+i + fh13874 464 EEGKPGYLDCLTQATPKPTVVWYRnQMLISedsrfevfKNGTLRINS 510 vsleDsGlYtCvArNsvg<-* v++ D Y+C + ++g fh13874 511 VEVYDGTWYRCMSSTPAG 528 SM00409: domain 6 of 7, from 548 to 629: score 45.1, E = 9.1e-09 *->pp.vtvke.GesvtLtC.as.....titWy................. p+++ +e +t +C+a++ ++ti+W + ++++ + +++ ++ fh13874 548 PQpQQCMEfDKEATVPCsATgrekpTIKWEradgsslpewvtdnagt 594 LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* L++ +vt++D+ G+YtC a++++ g++ + ++LtV fh13874 595 LHFaRVTRDDA---GNYTCIASngpQGQIRA--HVQLTVA 629 SM00408: domain 6 of 7, from 555 to 617: score 50.9, E = 1.7e-10 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.....sgstLtiknvs + + +t +C a+g++ p+I+W + +g++lp+ +++ +tL++ +v+ fh13874 555 EFDKEATVPCSATGREKPTIKWERadGSSLPewvtdNAGTLHFARVT 601 leDsGlYtCvArNsvg<-* ++D+G+YtC+A+N fh13874 602 RDDAGNYTCIASNGPQ 617 SM00409: domain 7 of 7, from 638 to 722: score 53.6, E = 2.6e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++tv G ++ L+C+a++++++ i+W+++++ ++++ +++ + fh13874 638 PErTTVYQGHTALLQCeAQgdpkpLIQWKgkdrildptklgprmhif 684 ....LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* ++++L+I++v peDs G YtC a +s +++ ++ L+V fh13874 685 qngsLVIhDVAPEDS---GRYTCIAGnSCNIKH-TEAPLYVV 722 SM00408: domain 7 of 7, from 644 to 711: score 55.7, E = 6.1e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G ++ L+C+a gdp p I+W+ ++ l++++ +++ + +++L fh13874 644 YQGHTALLQCEAQGDPKPLIQWKGkDRILDptklgprmhifQNGSLV 690 iknvsleDsGlYtCvArNsvg<-* i +v++eDsG+YtC+A Ns + fh13874 691 IHDVAPEDSGRYTCIAGNSCN 711 //