hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-18141891/chunk_1/iprscan-20080809-18141891.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh14412 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.fs ABC transporter 72.6 8.3e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00005.17.fs 1/1 257 386 .. 1 171 [. 72.6 8.3e-20 Alignments of top-scoring domains: PF00005.17.fs: domain 1 of 1, from 257 to 386: score 72.6, E = 8.3e-20 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGKS+ +k+l+G ++ t G+ l+ + + fh14412 257 GECFGLLGVNGAGKSSTFKMLTGDTT-VT--RGDAFLN------KNS 294 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + + ++ +++ +gy++Q+ + lT re + fh14412 295 ILSNIHEVHQN----MGYCPQFDAIT--ELLTGREHV------------- 325 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg e++++l+g++e+e + e+a++++Gl + + ++g fh14412 326 -EFFALLRGVpEKEVGKVGEWAIRKLGLVKYGEK-------------YAG 361 RF xxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlL<-* ++SGG k++++ A+al+ p++++L fh14412 362 NYSGGNKRKLSTAMALIGGPPVVFL 386 //