hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-18141891/chunk_1/iprscan-20080809-18141891.nocrc
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Query sequence: fh14412
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00005.17.fs ABC transporter                                 72.6    8.3e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00005.17.fs   1/1     257   386 ..     1   171 [.    72.6  8.3e-20

Alignments of top-scoring domains:
PF00005.17.fs: domain 1 of 1, from 257 to 386: score 72.6, E = 8.3e-20
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      Ge  +l+G NGaGKS+ +k+l+G ++  t   G+  l+      + +
     fh14412   257    GECFGLLGVNGAGKSSTFKMLTGDTT-VT--RGDAFLN------KNS 294  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                   + + ++  +++    +gy++Q+  +     lT re +             
     fh14412   295 ILSNIHEVHQN----MGYCPQFDAIT--ELLTGREHV------------- 325  

                RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg
                    e++++l+g++e+e  +  e+a++++Gl +   +             ++g
     fh14412   326 -EFFALLRGVpEKEVGKVGEWAIRKLGLVKYGEK-------------YAG 361  

                RF xxxxxxxxxxxxxxxxxxxxxxxxx   
                   tLSGGqkQRvaiARalltkpklLlL<-*
                   ++SGG k++++ A+al+  p++++L   
     fh14412   362 NYSGGNKRKLSTAMALIGGPPVVFL    386  

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