hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-18201965/chunk_1/iprscan-20080809-18201965.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh14889 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00179 712.7 1e-209 14 SM00181 436.8 1.2e-126 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00179 1/14 41 82 .. 1 34 [] 53.4 2.9e-11 SM00181 1/14 44 82 .. 1 32 [] 31.1 0.00015 SM00179 2/14 83 123 .. 1 34 [] 45.9 5.2e-09 SM00181 2/14 86 123 .. 1 32 [] 26.0 0.005 SM00179 3/14 201 242 .. 1 34 [] 55.5 6.7e-12 SM00181 3/14 204 242 .. 1 32 [] 33.8 2.3e-05 SM00179 4/14 243 283 .. 1 34 [] 53.4 3e-11 SM00181 4/14 246 283 .. 1 32 [] 32.4 6.1e-05 SM00179 5/14 284 325 .. 1 34 [] 48.4 9.5e-10 SM00181 5/14 287 325 .. 1 32 [] 31.7 9.8e-05 SM00179 6/14 326 364 .. 1 34 [] 48.6 8e-10 SM00181 6/14 329 364 .. 1 32 [] 30.4 0.00025 SM00179 7/14 365 407 .. 1 34 [] 60.4 2.3e-13 SM00181 7/14 368 407 .. 1 32 [] 35.3 8.4e-06 SM00179 8/14 408 447 .. 1 34 [] 56.7 3e-12 SM00181 8/14 411 447 .. 1 32 [] 36.7 3.2e-06 SM00179 9/14 448 489 .. 1 34 [] 56.4 3.7e-12 SM00181 9/14 451 489 .. 1 32 [] 31.7 9.9e-05 SM00179 10/14 562 600 .. 1 34 [] 51.5 1.1e-10 SM00181 10/14 565 600 .. 1 32 [] 35.7 6.3e-06 SM00179 11/14 601 640 .. 1 34 [] 52.6 5.2e-11 SM00181 11/14 604 640 .. 1 32 [] 33.6 2.7e-05 SM00179 12/14 641 681 .. 1 34 [] 52.6 5e-11 SM00181 12/14 644 681 .. 1 32 [] 31.9 9e-05 SM00179 13/14 682 725 .. 1 34 [] 31.3 0.00013 SM00181 13/14 685 725 .. 1 32 [] 14.6 13 SM00179 14/14 726 767 .. 1 34 [] 45.8 5.5e-09 SM00181 14/14 729 767 .. 1 32 [] 31.8 9.1e-05 Alignments of top-scoring domains: SM00179: domain 1 of 14, from 41 to 82: score 53.4, E = 2.9e-11 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DiDEC++ +++Cq G +CiN+ GS++C+Cp Gy+ + ++r C+ fh14889 41 DIDECqelpgLCQGG----KCINtFGSFQCrCPTGYYlnedtRVCD 82 -* fh14889 - - SM00181: domain 1 of 14, from 44 to 82: score 31.1, E = 0.00015 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC++ ++ C+ G +Ci++ +s++C+Cp Gy+++++++ C fh14889 44 ECQelpgLCQGG------KCIntfgSFQCrCP-TGYYLnedtrVCD 82 -* fh14889 - - SM00179: domain 2 of 14, from 83 to 123: score 45.9, E = 5.2e-09 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- D++EC+++++C++G tC N+vG Y+C Cpp y++ ++++nC fh14889 83 DVNECetpgICGPG----TCYNtVGNYTCiCPPDYMqvnggNNCM 123 * fh14889 - - SM00181: domain 2 of 14, from 86 to 123: score 26.0, E = 0.005 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ C++G tC ++ + ytC Cp p y+ +++++C fh14889 86 ECEtpgICGPG------TCYntvgNYTCiCP-PDYMQvnggnNCM 123 * fh14889 - - SM00179: domain 3 of 14, from 201 to 242: score 55.5, E = 6.7e-12 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DiDEC++ +++C nG +CiN vGS+rC+Cp G+ +++ Ce fh14889 201 DIDECreipgVCENG----VCINmVGSFRCeCPVGFFyndklLVCE 242 -* fh14889 - - SM00181: domain 3 of 14, from 204 to 242: score 33.8, E = 2.3e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC + ++ C+nG +Ci+ +s++C+Cp G+ +++ Ce fh14889 204 ECReipgVCENG------VCInmvgSFRCeCP-VGFFYndkllVCE 242 -* fh14889 - - SM00179: domain 4 of 14, from 243 to 283: score 53.4, E = 3e-11 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<-* DiDEC+++++Cq ++ CiN+ GSYrC+C+pGy+ +++++C fh14889 243 DIDECqngpVCQRNA---ECINtAGSYRCdCKPGYRftstGQCN 283 SM00181: domain 4 of 14, from 246 to 283: score 32.4, E = 6.1e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<-* eC++++ C+ + ++Ci++ +sy+C+C+ pGy+ +++++C fh14889 246 ECQngpVCQRN-----AECIntagSYRCdCK-PGYRFtstgQCN 283 SM00179: domain 5 of 14, from 284 to 325: score 48.4, E = 9.5e-10 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D +EC++ +++C++G +Ci++vGS++C C+ G+ ++++++ C fh14889 284 DRNECqeipnICSHG----QCIDtVGSFYClCHTGFKtnddqTMCL 325 -* fh14889 - - SM00181: domain 5 of 14, from 287 to 325: score 31.7, E = 9.8e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC++ ++ Cs+G +Ci++ +s++C C+ G++ +++++ C fh14889 287 ECQeipnICSHG------QCIdtvgSFYClCH-TGFKTnddqtMCL 325 -* fh14889 - - SM00179: domain 6 of 14, from 326 to 364: score 48.6, E = 8e-10 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<-* Di+EC+++ C+nG tC+N++GS+ C+C G+ ++++ C+ fh14889 326 DINECerdACGNG----TCRNtIGSFNCrCNHGFIlshnNDCI 364 SM00181: domain 6 of 14, from 329 to 364: score 30.4, E = 0.00025 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<-* eC+++ C+nG tC+++ +s+ C+C +G+++++++ C+ fh14889 329 ECErdACGNG------TCRntigSFNCrCN-HGFILshnnDCI 364 SM00179: domain 7 of 14, from 365 to 407: score 60.4, E = 2.3e-13 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe D+DEC ++++++C+nG +CiN+vGS++C+C +Gy+ +++r+C+ fh14889 365 DVDECasgngnLCRNG----QCINtVGSFQCqCNEGYEvapdgRTCV 407 <-* fh14889 - - SM00181: domain 7 of 14, from 368 to 407: score 35.3, E = 8.4e-06 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe eCa+++++ C nG +Ci++ +s++C+C +Gy+ +++++C+ fh14889 368 ECAsgngnLCRNG------QCIntvgSFQCqCN-EGYEVapdgrTCV 407 <-* fh14889 - - SM00179: domain 8 of 14, from 408 to 447: score 56.7, E = 3e-12 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-* Di+EC +++ C +G tC+N +GSYrC CppGy+ ++ Ce fh14889 408 DINEClleprKCAPG----TCQNlDGSYRCiCPPGYSlqnEKCE 447 SM00181: domain 8 of 14, from 411 to 447: score 36.7, E = 3.2e-06 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-* eC+ +++ C +G tC++ ++sy+C Cp pGy+++++ Ce fh14889 411 ECLleprKCAPG------TCQnldgSYRCiCP-PGYSLqneKCE 447 SM00179: domain 9 of 14, from 448 to 489: score 56.4, E = 3.7e-12 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DiDEC +++++C G tC N++GS++C Cp+G++ ++++r+C+ fh14889 448 DIDECveepeICALG----TCSNtEGSFKClCPEGFSlsssgRRCQ 489 -* fh14889 - - SM00181: domain 9 of 14, from 451 to 489: score 31.7, E = 9.9e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC ++++ C G tC ++++s++C Cp +G++++++++rC+ fh14889 451 ECVeepeICALG------TCSntegSFKClCP-EGFSLsssgrRCQ 489 -* fh14889 - - SM00179: domain 10 of 14, from 562 to 600: score 51.5, E = 1.1e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-* D DEC+++++C +G +CiN++GSYrC+Cp Gy ++ C+ fh14889 562 DMDECkepdVCKHG----QCINtDGSYRCeCPFGYIlagNECV 600 SM00181: domain 10 of 14, from 565 to 600: score 35.7, E = 6.3e-06 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-* eC +++ C +G +Ci++++sy+C+Cp Gy++ ++ C+ fh14889 565 ECKepdVCKHG------QCIntdgSYRCeCP-FGYILagnECV 600 SM00179: domain 11 of 14, from 601 to 640: score 52.6, E = 5.2e-11 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<-* D DEC+ ++pC+nG tC N +G+++C+C +G+++++ +Ce fh14889 601 DTDECsvgnPCGNG----TCKNvIGGFECtCEEGFEpgpmMTCE 640 SM00181: domain 11 of 14, from 604 to 640: score 33.6, E = 2.7e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<-* eC+ ++pC+nG tC + ++++C+C +G++ ++ +Ce fh14889 604 ECSvgnPCGNG------TCKnvigGFECtCE-EGFEPgpmmTCE 640 SM00179: domain 12 of 14, from 641 to 681: score 52.6, E = 5e-11 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< Di+EC +++ +C +C+N+ GSY+C+Cp Gy + ++r C+ fh14889 641 DINECaqnplLCAF-----RCVNtYGSYECkCPVGYVlredrRMCK 681 -* fh14889 - - SM00181: domain 12 of 14, from 644 to 681: score 31.9, E = 9e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa+++ C +C+++ +sy+C+Cp Gy ++++++ C+ fh14889 644 ECAqnplLCAF-------RCVntygSYECkCP-VGYVLredrrMCK 681 -* fh14889 - - SM00179: domain 13 of 14, from 682 to 725: score 31.3, E = 0.00013 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D DEC+++++ C C N +G Y C C pGy++++++ C+ fh14889 682 DEDECeegkhDCTEKQ--MECKNlIGTYMCiCGPGYQrrpdgEGCV 725 -* fh14889 - - SM00181: domain 13 of 14, from 685 to 725: score 14.6, E = 13 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC++++++C + + +C + ++y C C pGy+ +++++ C+ fh14889 685 ECEegkhDCTE----KQMECKnligTYMCiCG-PGYQRrpdgeGCV 725 -* fh14889 - - SM00179: domain 14 of 14, from 726 to 767: score 45.8, E = 5.5e-09 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D +EC++++++C nG +C N+ GSY+C+C +G+t ++++ C fh14889 726 DENECqtkpgICENG----RCLNtRGSYTCeCNDGFTaspnqDECL 767 -* fh14889 - - SM00181: domain 14 of 14, from 729 to 767: score 31.8, E = 9.1e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC+++++ C+nG +C+++++sytC+C +G+t +++++ C fh14889 729 ECQtkpgICENG------RCLntrgSYTCeCN-DGFTAspnqdECL 767 -* fh14889 - 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