hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-18264201/chunk_1/iprscan-20080809-18264201.nocrc
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Query sequence: fh14912
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         106.6    6.8e-29   4
PF00096.16.fs Zinc finger, C2H2 type                          99.6    8.5e-27   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   2/5      38    62 ..     1    24 []    29.0  5.6e-06
PF00096.16.ls   2/4      38    62 ..     1    24 []    31.0  3.8e-06
PF00096.16.fs   3/5      68    93 ..     1    24 []    26.5  2.4e-05
PF00096.16.ls   3/4      68    93 ..     1    24 []    28.5  2.2e-05
PF00096.16.fs   4/5      99   124 ..     1    24 []    29.7  3.7e-06
PF00096.16.ls   4/4      99   124 ..     1    24 []    31.7  2.4e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 2 of 5, from 38 to 62: score 29.0, E = 5.6e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      +kC+f++C k++sr +nLk+Hlr+H   
     fh14912    38    HKCTFeGCSKAYSRLENLKTHLRSH    62   

PF00096.16.ls: domain 2 of 4, from 38 to 62: score 31.0, E = 3.8e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      +kC+f++C k++sr +nLk+Hlr+H   
     fh14912    38    HKCTFeGCSKAYSRLENLKTHLRSH    62   

PF00096.16.fs: domain 3 of 5, from 68 to 93: score 26.5, E = 2.4e-05
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      y+C++++C+k+Fs+ s+  +H++++H   
     fh14912    68    YVCEHeGCNKAFSNASDRAKHQNRtH    93   

PF00096.16.ls: domain 3 of 4, from 68 to 93: score 28.5, E = 2.2e-05
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      y+C++++C+k+Fs+ s+  +H++++H   
     fh14912    68    YVCEHeGCNKAFSNASDRAKHQNRtH    93   

PF00096.16.fs: domain 4 of 5, from 99 to 124: score 29.7, E = 3.7e-06
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      y C++++C k+++++s+L++H +t H   
     fh14912    99    YICKIpGCTKRYTDPSSLRKHVKTvH    124  

PF00096.16.ls: domain 4 of 4, from 99 to 124: score 31.7, E = 2.4e-06
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      y C++++C k+++++s+L++H +t H   
     fh14912    99    YICKIpGCTKRYTDPSSLRKHVKTvH    124  

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