hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-18264201/chunk_1/iprscan-20080809-18264201.nocrc
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Query sequence: fh14912
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  98.1      1e-24   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/4       5    32 ..     1    23 []    14.3      7.6
SM00355      2/4      38    62 ..     1    23 []    27.1   0.0024
SM00355      3/4      68    93 ..     1    23 []    26.1    0.005
SM00355      4/4      99   124 ..     1    23 []    30.6  0.00021

Alignments of top-scoring domains:
SM00355: domain 1 of 4, from 5 to 32: score 14.3, E = 7.6
                   *->ykCpi.gCg...ksfssk.aLkrHmrvH<-*
                      ++C ++ C +++k f+ +  L+ Hmr+H   
     fh14912     5    FVCRWqACTreqKPFKAQyMLVVHMRRH    32   

SM00355: domain 2 of 4, from 38 to 62: score 27.1, E = 0.0024
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      +kC+++gC+k +s+ ++Lk H+r+H   
     fh14912    38    HKCTFeGCSKAYSRLeNLKTHLRSH    62   

SM00355: domain 3 of 4, from 68 to 93: score 26.1, E = 0.005
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      y+C+++gC+k fs++++  +H+ ++H   
     fh14912    68    YVCEHeGCNKAFSNAsDRAKHQNrTH    93   

SM00355: domain 4 of 4, from 99 to 124: score 30.6, E = 0.00021
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      y C+i+gC k+++++++L++H+++vH   
     fh14912    99    YICKIpGCTKRYTDPsSLRKHVKtVH    124  

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