hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08413201/chunk_1/iprscan-20090618-08413201.nocrc
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Query sequence: fh15286
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01429.10.fs Methyl-CpG binding domain                       16.9     0.0003   1
PF01429.10.ls Methyl-CpG binding domain                       18.4    0.00043   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01429.10.fs   1/1      14    87 ..     1   129 []    16.9   0.0003
PF01429.10.ls   1/1      14    87 ..     1   129 []    18.4  0.00043

Alignments of top-scoring domains:
PF01429.10.fs: domain 1 of 1, from 14 to 87: score 16.9, E = 0.0003
                   *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk
                       r+  +  + +p GW+R +                          + 
     fh15286    14    DRAGGPVATSVPIGWQRCV--------------------------RE 34   

                   fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs
                   + V Y+sP+G +l+s  +   YL   g+                      
     fh15286    35 GAVLYISPSGTELSSLEQTRSYLLSDGT---------------------- 62   

                   rarrngksnkKvsvtslk..ledFdFttrkevgr<-*
                            +K+++ ++++ ++ F+F++   v +   
     fh15286    63 ---------CKCGLECPLnvPKVFNFDPLAPVTP    87   

PF01429.10.ls: domain 1 of 1, from 14 to 87: score 18.4, E = 0.00043
                   *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk
                       r+  +  + +p GW+R +                          + 
     fh15286    14    DRAGGPVATSVPIGWQRCV--------------------------RE 34   

                   fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs
                   + V Y+sP+G +l+s  +   YL   g+                      
     fh15286    35 GAVLYISPSGTELSSLEQTRSYLLSDGT---------------------- 62   

                   rarrngksnkKvsvtslk..ledFdFttrkevgr<-*
                            +K+++ ++++ ++ F+F++   v +   
     fh15286    63 ---------CKCGLECPLnvPKVFNFDPLAPVTP    87   

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