hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-18395618/chunk_1/iprscan-20080809-18395618.nocrc
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Query sequence: fh15402
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00487.14.fs Fatty acid desaturase                      63.9    3.2e-18   1
PF00487.14.ls Fatty acid desaturase                      11.6    2.4e-07   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00487.14.fs   1/1     102   204 ..     1   125 [.    63.9  3.2e-18
PF00487.14.ls   1/1     102   295 ..     1   295 []    11.6  2.4e-07

Alignments of top-scoring domains:
PF00487.14.fs: domain 1 of 1, from 102 to 204: score 63.9, E = 3.2e-18
                   *->awlaggtaltglfvtsGLGITaggHdLcsHrsfsknsylndlvGril
                      a+++++   ++ +         + Hd ++H s++k+s++n++  +++
     fh15402   102    AFILAISQAQSWC---------LQHD-LGHASIFKKSWWNHVAQKFV 138  

                   lalplgvpfqgsiieWrrsHrtHHrytntdekDPdiaprgffavswpk.s
                   +  + g++ ++    W + H +HH+ +n+ +kDPd    + f     +  
     fh15402   139 MGQLKGFSAHW----WNFRHFQHHAKPNIFHKDPDVTVAPVF-----LlG 179  

                   h.svhye.kkvllfshvgwllvrklplyfll<-*
                   ++sv y++k      + + l +  ++lyf+l   
     fh15402   180 EsSVEYGkK------KRRYLPYNQQHLYFFL    204  

PF00487.14.ls: domain 1 of 1, from 102 to 295: score 11.6, E = 2.4e-07
                   *->awlaggtaltglfvtsGLGITaggHdLcsHrsfsknsylndlvGril
                      a+++++   ++ +         + Hd ++H s++k+s++n++  +++
     fh15402   102    AFILAISQAQSWC---------LQHD-LGHASIFKKSWWNHVAQKFV 138  

                   lalplgvpfqgsiieWrrsHrtHHrytntdekDPdiaprgffavsw.pks
                   +  + g++ ++    W + H +HH+ +n+ +kDPd    + f   +++  
     fh15402   139 MGQLKGFSAHW----WNFRHFQHHAKPNIFHKDPDVTVAPVFLLGEsS-- 182  

                   hsvhyekkvllfshvgwllvrklplyflliyplrlakgvpGKYdrkklds
                                 +g+  +r+lp+                         
     fh15402   183 ------------VEYGKKKRRYLPY------------------------- 195  

                   hdlprsplfrfqaaeryyvllsllglfalptllplllwglgglwgvlkfy
                     +  + +f     e   ++  llg+   +++ +l++  +++ + +  ++
     fh15402   196 --NQQHLYFFLS--E---CPSVLLGWGSAWACTVLPAVLDHSQP-LPGAG 237  

                   lvpylvvgfwlglvnsylaHtggerklPppfappeYdgensiewdwdrgq
                    v ++ ++++ ++  +       ++       +                 
     fh15402   238 HVCQVSLVMASSQPLQ-------SV-------H----------------- 256  

                   lsttvdrdygkllnllfhgegNyHveHHlFPtiPhynlpkat...paikp
                      t    +  +  l ++g++              ++ p +  ++p+++ 
     fh15402   257 ---TLPAACLCPSCLPCLGHL----------AATGHHSPAGSfpkPHVEF 293  

                   tl<-*
                   +l   
     fh15402   294 LL    295  

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