hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-16524623/chunk_1/iprscan-20090630-16524623.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh15405s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07646.5.ls Kelch motif 72.8 9.8e-19 5 PF07646.5.fs Kelch motif 66.5 3.1e-17 4 PF01344.15.fs Kelch motif 60.2 2.9e-16 3 PF01344.15.ls Kelch motif 58.4 2.2e-14 3 PF00646.23.fs F-box domain 34.3 4.4e-08 1 PF00646.23.ls F-box domain 36.3 9.8e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00646.23.fs 1/1 78 126 .. 1 46 [] 34.3 4.4e-08 PF00646.23.ls 1/1 78 126 .. 1 46 [] 36.3 9.8e-08 PF01344.15.ls 1/3 151 202 .. 1 45 [] 11.7 0.17 PF07646.5.fs 1/4 151 201 .. 1 54 [] 21.9 4.4e-05 PF01344.15.fs 1/3 151 196 .. 1 40 [. 15.1 0.0018 PF07646.5.ls 1/5 151 201 .. 1 54 [] 23.8 0.00058 PF01344.15.ls 2/3 206 260 .. 1 45 [] 13.6 0.1 PF07646.5.fs 3/4 264 310 .. 1 54 [] 40.0 5.1e-10 PF01344.15.ls 3/3 264 310 .. 1 45 [] 33.0 9.4e-07 PF01344.15.fs 3/3 264 305 .. 1 40 [. 33.4 1.2e-08 PF07646.5.ls 3/5 264 310 .. 1 54 [] 41.9 2.1e-09 Alignments of top-scoring domains: PF00646.23.fs: domain 1 of 1, from 78 to 126: score 34.3, E = 4.4e-08 *->fslldLPdellleIlsrLdpkd.llrlslVSkrwrslvdsl.lwk.k +s+++LP+e+l+ Ils+L+p +++ +++lV+k+w++l++ + + + fh15405s1 78 RSMSELPEEVLEYILSFLSPYQeHKTAALVCKQWYRLIKGVaHQCyH 124 ll<-* fh15405s1 125 GF 126 PF00646.23.ls: domain 1 of 1, from 78 to 126: score 36.3, E = 9.8e-08 *->fslldLPdellleIlsrLdpkd.llrlslVSkrwrslvdsl.lwk.k +s+++LP+e+l+ Ils+L+p +++ +++lV+k+w++l++ + + + fh15405s1 78 RSMSELPEEVLEYILSFLSPYQeHKTAALVCKQWYRLIKGVaHQCyH 124 ll<-* fh15405s1 125 GF 126 PF01344.15.ls: domain 1 of 3, from 151 to 202: score 11.7, E = 0.17 *->pRsgagvvvld..gkiYviGGydg....qslnsvevYDpetntW.tk R +++++++d + +Yv+GG++ ++ + ++n+ +++D+ +++W ++ fh15405s1 151 QRFSHSACYYDanQSMYVFGGCTQsscnAAFNDLWRLDLNSKEWiRP 197 lpsmp<-* l+s + fh15405s1 198 LASGS 202 PF07646.5.fs: domain 1 of 4, from 151 to 201: score 21.9, E = 4.4e-05 *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn +r +h+++ ++ ++ +yv+GG+ ++ +++dl++ld++++ fh15405s1 151 QRFSHSACYYdaNQSMYVFGGC-----TQSSCNAAFNDLWRLDLNSK 192 vWeklpalp<-* +W + a + fh15405s1 193 EWIRPLASG 201 PF01344.15.fs: domain 1 of 3, from 151 to 196: score 15.1, E = 0.0018 *->pRsgagvvvld..gkiYviGGydg....qslnsvevYDpetntWtk< R +++++++d + +Yv+GG++ ++ + ++n+ +++D+ +++W + fh15405s1 151 QRFSHSACYYDanQSMYVFGGCTQsscnAAFNDLWRLDLNSKEWIR 196 -* fh15405s1 - - PF07646.5.ls: domain 1 of 5, from 151 to 201: score 23.8, E = 0.00058 *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn +r +h+++ ++ ++ +yv+GG+ ++ +++dl++ld++++ fh15405s1 151 QRFSHSACYYdaNQSMYVFGGC-----TQSSCNAAFNDLWRLDLNSK 192 vWeklpalp<-* +W + a + fh15405s1 193 EWIRPLASG 201 PF01344.15.ls: domain 2 of 3, from 206 to 260: score 13.6, E = 0.1 *->pRsgagvvvldgkiYviGGydg..........qslnsvevYDpetnt p +ga+ vv+++++ +GG++ +++ + ++++++++ + Y+p++n fh15405s1 206 PKAGATLVVYKDLLVLFGGWTRpspyplhqpeRFFDEIHTYSPSKNW 252 Wtklpsmp<-* W + + fh15405s1 253 WNCIVTTH 260 PF07646.5.fs: domain 3 of 4, from 264 to 310: score 40.0, E = 5.1e-10 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+++h+s+v+++k++v+GGs ++ s+d++vld+e ++W fh15405s1 264 PMAGHSSCVIDDKMIVFGGS-------LGSRQMSNDVWVLDLEQWAW 303 eklpalp<-* +k + + fh15405s1 304 SKPNISG 310 PF01344.15.ls: domain 3 of 3, from 264 to 310: score 33.0, E = 9.4e-07 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp p +g++++v+d+k+ v+GG+ g++q +n+v+v+D+e W+k + fh15405s1 264 PMAGHSSCVIDDKMIVFGGSLGsrQMSNDVWVLDLEQWAWSKPNISG 310 <-* fh15405s1 - - PF01344.15.fs: domain 3 of 3, from 264 to 305: score 33.4, E = 1.2e-08 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtk<-* p +g++++v+d+k+ v+GG+ g++q +n+v+v+D+e W+k fh15405s1 264 PMAGHSSCVIDDKMIVFGGSLGsrQMSNDVWVLDLEQWAWSK 305 PF07646.5.ls: domain 3 of 5, from 264 to 310: score 41.9, E = 2.1e-09 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+++h+s+v+++k++v+GGs ++ s+d++vld+e ++W fh15405s1 264 PMAGHSSCVIDDKMIVFGGS-------LGSRQMSNDVWVLDLEQWAW 303 eklpalp<-* +k + + fh15405s1 304 SKPNISG 310 //