# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh15958.fasta.nr -Q fh15958.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh15958, 164 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824798 sequences Expectation_n fit: rho(ln(x))= 4.4744+/-0.000181; mu= 10.2775+/- 0.010 mean_var=59.8445+/-11.607, 0's: 40 Z-trim: 41 B-trim: 0 in 0/67 Lambda= 0.165791 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088296|dbj|BAD92595.1| potassium channel tetr ( 164) 1124 276.5 1.1e-72 gi|14042295|dbj|BAB55188.1| unnamed protein produc ( 310) 933 231.0 9.8e-59 gi|74733570|sp|Q9H3F6|KCD10_HUMAN BTB/POZ domain-c ( 313) 933 231.0 9.9e-59 gi|62896655|dbj|BAD96268.1| potassium channel tetr ( 313) 933 231.0 9.9e-59 gi|119618270|gb|EAW97864.1| potassium channel tetr ( 322) 933 231.0 1e-58 gi|114646849|ref|XP_001137251.1| PREDICTED: simila ( 286) 925 229.1 3.5e-58 gi|50603619|gb|AAH77866.1| Kctd10-prov protein [Xe ( 313) 924 228.9 4.4e-58 gi|118098597|ref|XP_415191.2| PREDICTED: similar t ( 313) 923 228.6 5.2e-58 gi|89271830|emb|CAJ81410.1| potassium channel tetr ( 267) 921 228.1 6.4e-58 gi|62857995|ref|NP_001016558.1| potassium channel ( 313) 921 228.2 7.3e-58 gi|114646845|ref|XP_001137912.1| PREDICTED: simila ( 305) 919 227.7 9.9e-58 gi|151554137|gb|AAI48101.1| KCTD10 protein [Bos ta ( 315) 919 227.7 1e-57 gi|81879898|sp|Q922M3|KCD10_MOUSE BTB/POZ domain-c ( 315) 919 227.7 1e-57 gi|81865386|sp|Q7TPL3|KCD10_RAT BTB/POZ domain-con ( 315) 919 227.7 1e-57 gi|194214189|ref|XP_001496921.2| PREDICTED: simila ( 315) 919 227.7 1e-57 gi|109098661|ref|XP_001105476.1| PREDICTED: simila ( 316) 919 227.7 1e-57 gi|114646841|ref|XP_001137814.1| PREDICTED: simila ( 324) 919 227.7 1e-57 gi|109098659|ref|XP_001105027.1| PREDICTED: simila ( 324) 919 227.7 1e-57 gi|47226516|emb|CAG08532.1| unnamed protein produc ( 313) 910 225.5 4.5e-57 gi|38494328|gb|AAH61457.1| Potassium channel tetra ( 313) 900 223.1 2.4e-56 gi|119618266|gb|EAW97860.1| potassium channel tetr ( 132) 890 220.4 6.5e-56 gi|193787285|dbj|BAG52491.1| unnamed protein produ ( 132) 881 218.3 2.9e-55 gi|73994802|ref|XP_851671.1| PREDICTED: similar to ( 287) 787 196.1 3e-48 gi|47027968|gb|AAT09002.1| potassium channel tetra ( 290) 787 196.1 3e-48 gi|109098663|ref|XP_001105406.1| PREDICTED: simila ( 292) 773 192.7 3.1e-47 gi|123892525|sp|Q28DC9.1|TNAP1_XENTR BTB/POZ domai ( 319) 688 172.4 4.4e-41 gi|51701587|sp|Q8BGV7|KCD13_MOUSE BTB/POZ domain-c ( 329) 683 171.3 1e-40 gi|32479003|gb|AAP83692.1| PDIP1 [Rattus norvegicu ( 329) 683 171.3 1e-40 gi|119600376|gb|EAW79970.1| potassium channel tetr ( 170) 676 169.3 2e-40 gi|82075078|sp|Q5F3E8.1|TNAP1_CHICK BTB/POZ domain ( 314) 678 170.0 2.3e-40 gi|82178918|sp|Q5EAX2.1|TNAP1_XENLA BTB/POZ domain ( 319) 677 169.8 2.7e-40 gi|51701604|sp|Q8WZ19|KCD13_HUMAN BTB/POZ domain-c ( 329) 677 169.8 2.8e-40 gi|122136995|sp|Q2T9W0|KCD13_BOVIN BTB/POZ domain- ( 329) 675 169.3 3.9e-40 gi|73958443|ref|XP_858256.1| PREDICTED: similar to ( 328) 674 169.1 4.6e-40 gi|57088333|ref|XP_547062.1| PREDICTED: similar to ( 329) 674 169.1 4.6e-40 gi|15072406|gb|AAK27301.1| TNFAIP1-like protein [H ( 329) 671 168.4 7.5e-40 gi|126335579|ref|XP_001368373.1| PREDICTED: hypoth ( 340) 671 168.4 7.7e-40 gi|75042027|sp|Q5RBH4.1|TNAP1_PONAB BTB/POZ domain ( 316) 668 167.7 1.2e-39 gi|114668548|ref|XP_001147210.1| PREDICTED: simila ( 257) 667 167.3 1.2e-39 gi|2833248|sp|Q13829|TNAP1_HUMAN BTB/POZ domain-co ( 316) 667 167.4 1.4e-39 gi|73966948|ref|XP_548281.2| PREDICTED: similar to ( 316) 667 167.4 1.4e-39 gi|149724088|ref|XP_001504166.1| PREDICTED: tumor ( 316) 667 167.4 1.4e-39 gi|114668544|ref|XP_523769.2| PREDICTED: tumor nec ( 316) 667 167.4 1.4e-39 gi|54697102|gb|AAV38923.1| tumor necrosis factor, ( 317) 667 167.4 1.4e-39 gi|73966950|ref|XP_868126.1| PREDICTED: similar to ( 319) 667 167.4 1.4e-39 gi|482321|pir||A41784 tumor necrosis factor-alpha- ( 348) 667 167.4 1.5e-39 gi|61810989|ref|XP_588697.1| PREDICTED: similar to ( 316) 665 166.9 2e-39 gi|194219061|ref|XP_001496452.2| PREDICTED: simila ( 351) 665 167.0 2.1e-39 gi|74212320|dbj|BAE40313.1| unnamed protein produc ( 316) 663 166.5 2.8e-39 gi|26329859|dbj|BAC28668.1| unnamed protein produc ( 316) 663 166.5 2.8e-39 >>gi|62088296|dbj|BAD92595.1| potassium channel tetramer (164 aa) initn: 1124 init1: 1124 opt: 1124 Z-score: 1460.2 bits: 276.5 E(): 1.1e-72 Smith-Waterman score: 1124; 100.000% identity (100.000% similar) in 164 aa overlap (1-164:1-164) 10 20 30 40 50 60 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGD 10 20 30 40 50 60 70 80 90 100 110 120 fh1595 EICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDN 70 80 90 100 110 120 130 140 150 160 fh1595 ALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::::::::::::::::::::::: gi|620 ALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ 130 140 150 160 >>gi|14042295|dbj|BAB55188.1| unnamed protein product [H (310 aa) initn: 933 init1: 933 opt: 933 Z-score: 1209.6 bits: 231.0 E(): 9.8e-59 Smith-Waterman score: 933; 98.571% identity (99.286% similar) in 140 aa overlap (25-164:171-310) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|140 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 150 160 170 180 190 200 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|140 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 210 220 230 240 250 260 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::::::::::::::::::::::::::::: gi|140 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ 270 280 290 300 310 >>gi|74733570|sp|Q9H3F6|KCD10_HUMAN BTB/POZ domain-conta (313 aa) initn: 933 init1: 933 opt: 933 Z-score: 1209.5 bits: 231.0 E(): 9.9e-59 Smith-Waterman score: 933; 98.571% identity (99.286% similar) in 140 aa overlap (25-164:174-313) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|747 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 150 160 170 180 190 200 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 210 220 230 240 250 260 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ 270 280 290 300 310 >>gi|62896655|dbj|BAD96268.1| potassium channel tetramer (313 aa) initn: 933 init1: 933 opt: 933 Z-score: 1209.5 bits: 231.0 E(): 9.9e-59 Smith-Waterman score: 933; 98.571% identity (99.286% similar) in 140 aa overlap (25-164:174-313) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|628 TSSKEEQKLIATSNKPAVKLLYNRSNTKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 150 160 170 180 190 200 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 210 220 230 240 250 260 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ 270 280 290 300 310 >>gi|119618270|gb|EAW97864.1| potassium channel tetramer (322 aa) initn: 933 init1: 933 opt: 933 Z-score: 1209.4 bits: 231.0 E(): 1e-58 Smith-Waterman score: 933; 98.571% identity (99.286% similar) in 140 aa overlap (25-164:183-322) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|119 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 160 170 180 190 200 210 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 220 230 240 250 260 270 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ 280 290 300 310 320 >>gi|114646849|ref|XP_001137251.1| PREDICTED: similar to (286 aa) initn: 793 init1: 793 opt: 925 Z-score: 1199.7 bits: 229.1 E(): 3.5e-58 Smith-Waterman score: 925; 87.117% identity (90.798% similar) in 163 aa overlap (4-164:124-286) 10 20 30 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNM :. : : . . : .. . ::::::: gi|114 GAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQPAVKLLYNRSNNKYSYTSNSDDNM 100 110 120 130 140 150 40 50 60 70 80 90 fh1595 LKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKV 160 170 180 190 200 210 100 110 120 130 140 150 fh1595 EFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSHHLDEDEERER--IERVRRI ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|114 EFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSHHLDEDEERERERIERVRRI 220 230 240 250 260 270 160 fh1595 HIKRPDDRAHLHQ ::::::::::::: gi|114 HIKRPDDRAHLHQ 280 >>gi|50603619|gb|AAH77866.1| Kctd10-prov protein [Xenopu (313 aa) initn: 924 init1: 924 opt: 924 Z-score: 1197.9 bits: 228.9 E(): 4.4e-58 Smith-Waterman score: 924; 96.429% identity (99.286% similar) in 140 aa overlap (25-164:174-313) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|506 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 150 160 170 180 190 200 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 210 220 230 240 250 260 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::.:.::::::::::::.::::::::::: gi|506 GRGPDNALLEATGGAAGRSHHLDDDDERERIERVRRIHVKRPDDRAHLHQ 270 280 290 300 310 >>gi|118098597|ref|XP_415191.2| PREDICTED: similar to MS (313 aa) initn: 923 init1: 923 opt: 923 Z-score: 1196.6 bits: 228.6 E(): 5.2e-58 Smith-Waterman score: 923; 97.143% identity (99.286% similar) in 140 aa overlap (25-164:174-313) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|118 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 150 160 170 180 190 200 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|118 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYESQD 210 220 230 240 250 260 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ ::::::::::::::::::::::.::::::::::::::::::::::::::: gi|118 GRGPDNALLEATGGAAGRSHHLEEDEERERIERVRRIHIKRPDDRAHLHQ 270 280 290 300 310 >>gi|89271830|emb|CAJ81410.1| potassium channel tetramer (267 aa) initn: 921 init1: 921 opt: 921 Z-score: 1194.9 bits: 228.1 E(): 6.4e-58 Smith-Waterman score: 921; 96.429% identity (99.286% similar) in 140 aa overlap (25-164:128-267) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|892 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 100 110 120 130 140 150 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|892 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 160 170 180 190 200 210 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::.:.::.::::::::::::::::::::: gi|892 GRGPDNALLEATGGAAGRSHHLDDDDERDRIERVRRIHIKRPDDRAHLHQ 220 230 240 250 260 >>gi|62857995|ref|NP_001016558.1| potassium channel tetr (313 aa) initn: 921 init1: 921 opt: 921 Z-score: 1194.0 bits: 228.2 E(): 7.3e-58 Smith-Waterman score: 921; 96.429% identity (99.286% similar) in 140 aa overlap (25-164:174-313) 10 20 30 40 50 fh1595 GPACRRAQQMMAVFTSLWSPYQMLFCSNSDDNMLKNIELFDKLSLRFNGRVLFI . :::::::::::::::::::::::::::: gi|628 TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFI 150 160 170 180 190 200 60 70 80 90 100 110 fh1595 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 KDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQD 210 220 230 240 250 260 120 130 140 150 160 fh1595 GRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ :::::::::::::::::::::::.:.::.::::::::::::::::::::: gi|628 GRGPDNALLEATGGAAGRSHHLDDDDERDRIERVRRIHIKRPDDRAHLHQ 270 280 290 300 310 164 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 19:03:44 2008 done: Sat Aug 9 19:06:43 2008 Total Scan time: 585.950 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]