hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-19193285/chunk_1/iprscan-20080809-19193285.nocrc
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Query sequence: fh16050
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00109                                                  84.9    9.5e-21   2
SM00054                                                  25.8      0.006   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/1      15    43 ..     1    29 []    25.8    0.006
SM00109    1/2      62   109 ..     1    61 []    56.3  3.8e-12
SM00109    2/2     124   175 ..     1    61 []    28.6  0.00087

Alignments of top-scoring domains:
SM00054: domain 1 of 1, from 15 to 43: score 25.8, E = 0.006
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l+e+++e+D Dg+G ++  E++++ ++    
     fh16050    15    ILQEMMKEIDYDGSGSVSQAEWVRAGATT    43   

SM00109: domain 1 of 2, from 62 to 109: score 56.3, E = 3.8e-12
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H ++ ++f++p +C++C++si+ +      +qgl+C  Ck+++H++C
     fh16050    62    HMWRPKRFpRPVYCNLCESSIGLG------KQGLSCNLCKYTVHDQC 102  

                   aekvpaqshksglsC<-*
                   a k++        +C   
     fh16050   103 AMKAL--------PC    109  

SM00109: domain 2 of 2, from 124 to 175: score 28.6, E = 0.00087
                   *->Hkfvfrtf..kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkk
                       ++v+++ +  + +Cd C+k+i+ +   +    gl C +C++ +H++
     fh16050   124    QSHVWVRGgcESGRCDRCQKKIRIYHSLT----GLHCVWCHLEIHDD 166  

                   CaekvpaqshksglsC<-*
                   C+  v          C   
     fh16050   167 CLQAVGH-------EC    175  

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