hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-19254224/chunk_1/iprscan-20080809-19254224.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh16154 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02932.6.fs Neurotransmitter-gated ion-channel tra 406.6 1.9e-122 1 PF02932.6.ls Neurotransmitter-gated ion-channel tra 408.5 8.8e-120 1 PF02931.14.fs Neurotransmitter-gated ion-channel lig 200.4 3.8e-57 1 PF02931.14.ls Neurotransmitter-gated ion-channel lig 92.5 1.1e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02931.14.ls 1/1 2 149 .. 1 246 [] 92.5 1.1e-24 PF02931.14.fs 1/1 34 149 .. 112 246 .] 200.4 3.8e-57 PF02932.6.fs 1/1 156 524 .. 1 289 [] 406.6 1.9e-122 PF02932.6.ls 1/1 156 524 .. 1 289 [] 408.5 8.8e-120 Alignments of top-scoring domains: PF02931.14.ls: domain 1 of 1, from 2 to 149: score 92.5, E = 1.1e-24 *->eerLlddLlennvsgYdkrvRPvengsdlppvtVsvglylqqiidVd P ++++ + fh16154 2 ---------------------P--EPGE-A----------------- 7 EknqdlttnvwlrqqWtDerLaWdPedpDvlgdYggikslrlpsddEhdm +rL ++g l+ + fh16154 8 ------------------PRLDRA---------HPGCACAELSLL----W 26 lkkIWlPDivLyNsnadgnhdvttpntnvrvypgkkdGtVlwspPaiyks l + + +adg++ vt + t++ +++ dG+V+w+pPaiyks fh16154 27 LC------CCTFT-SADGDFAVT-HLTKAHLFH---DGRVQWTPPAIYKS 65 sCpidvtyFPFDqQnCslkFgSwtYngnevdLrwkddtpvvekeeidLsd sC+idvt+FPFDqQnC++kFgSwtY++ ++dL+ ++ +d d fh16154 66 SCSIDVTFFPFDQQNCTMKFGSWTYDKAKIDLVNMH-------SRVDQLD 108 FtengeWdildvpakrnekpygccseltsagLnlvYpditfylvlrRkp< F+e+geW+i+d+ ++ n+ +y+cc e Ypdit+ +v+rR p fh16154 109 FWESGEWVIVDAVGTYNTRKYECCAEI--------YPDITYAFVIRRLP 149 -* fh16154 - - PF02931.14.fs: domain 1 of 1, from 34 to 149: score 200.4, E = 3.8e-57 *->nadgnhdvttpntnvrvypgkkdGtVlwspPaiykssCpidvtyFPF +adg++ vt + t++ +++ dG+V+w+pPaiykssC+idvt+FPF fh16154 34 SADGDFAVT-HLTKAHLFH---DGRVQWTPPAIYKSSCSIDVTFFPF 76 DqQnCslkFgSwtYngnevdLrwkddtpvvekeeidLsdFtengeWdild DqQnC++kFgSwtY++ ++dL+ ++ +d dF+e+geW+i+d fh16154 77 DQQNCTMKFGSWTYDKAKIDLVNMH-------SRVDQLDFWESGEWVIVD 119 vpakrnekpygccseltsagLnlvYpditfylvlrRkp<-* + ++ n+ +y+cc e Ypdit+ +v+rR p fh16154 120 AVGTYNTRKYECCAEI--------YPDITYAFVIRRLP 149 PF02932.6.fs: domain 1 of 1, from 156 to 524: score 406.6, E = 1.9e-122 *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei liiPC+LIs+L++LvFyLPs++G eK+tL+IsvLL+lTvFllli+ei fh16154 156 LIIPCLLISCLTVLVFYLPSECG-EKITLCISVLLSLTVFLLLITEI 201 lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv +P+TSlv+PLig+YllFtM++vt+si+++v+vlnvhhRsP +tH+mp wv fh16154 202 IPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSP-RTHTMPTWV 250 rklfLerklPrllfmkrpneslsepnskrpllrr..p.gssssgaslkae r++fL +++Prll+mkrp+ ++n+ r++++++++ +++++++ ++e fh16154 251 RRVFL-DIVPRLLLMKRPSVV--KDNCRRLIESMhkMaSAPRFWPEPEGE 297 eyslskprselmfekg.................................. + s++ s l+++ ++ + + + +++++ ++++++ +++++ + ++ fh16154 298 PPATSGTQS-LHPPSPsfcvpldvpaepgpsckspsdqlppqqpleaeka 346 ...............................spe.le.e.........yl ++++++++ +++++++ ++ + ++ + ++ s++++ e++ + +++++ fh16154 347 sphpspgpcrpphgtqapglakarslsvqhmSSPgEAvEggvrcrsrsIQ 396 .c.a..........HlqgardgldssgtakggrgkthpCkc.c.k.s.kg c ++++ ++ ++ +ga ++ +++++ + +++ pCkc+c+k+ ++ fh16154 397 yCvPrddaapeadgQAAGALASRNTHSAELPPPDQPSPCKCtCkKePsSV 446 gp.v.gesggslsplslkrlspelkkaiegvsrfIaehvgpkaavkawlr p+++ + + +++p+++ +lsp+l +a+egv ++Ia+h l+ fh16154 447 SPsAtVKTRSTKAPPPHLPLSPALTRAVEGV-QYIADH----------LK 485 skdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-* +d d+svkedWkyvamvIDR+flw+F+iv++lGT+g+f fh16154 486 AEDTDFSVKEDWKYVAMVIDRIFLWMFIIVCLLGTVGLF 524 PF02932.6.ls: domain 1 of 1, from 156 to 524: score 408.5, E = 8.8e-120 *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei liiPC+LIs+L++LvFyLPs++G eK+tL+IsvLL+lTvFllli+ei fh16154 156 LIIPCLLISCLTVLVFYLPSECG-EKITLCISVLLSLTVFLLLITEI 201 lPkTSlvvPLigkYllFtMfvvtasieyavvvlnvhhRsPkstHkmppwv +P+TSlv+PLig+YllFtM++vt+si+++v+vlnvhhRsP +tH+mp wv fh16154 202 IPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSP-RTHTMPTWV 250 rklfLerklPrllfmkrpneslsepnskrpllrr..p.gssssgaslkae r++fL +++Prll+mkrp+ ++n+ r++++++++ +++++++ ++e fh16154 251 RRVFL-DIVPRLLLMKRPSVV--KDNCRRLIESMhkMaSAPRFWPEPEGE 297 eyslskprselmfekg.................................. + s++ s l+++ ++ + + + +++++ ++++++ +++++ + ++ fh16154 298 PPATSGTQS-LHPPSPsfcvpldvpaepgpsckspsdqlppqqpleaeka 346 ...............................spe.le.e.........yl ++++++++ +++++++ ++ + ++ + ++ s++++ e++ + +++++ fh16154 347 sphpspgpcrpphgtqapglakarslsvqhmSSPgEAvEggvrcrsrsIQ 396 .c.a..........HlqgardgldssgtakggrgkthpCkc.c.k.s.kg c ++++ ++ ++ +ga ++ +++++ + +++ pCkc+c+k+ ++ fh16154 397 yCvPrddaapeadgQAAGALASRNTHSAELPPPDQPSPCKCtCkKePsSV 446 gp.v.gesggslsplslkrlspelkkaiegvsrfIaehvgpkaavkawlr p+++ + + +++p+++ +lsp+l +a+egv ++Ia+h l+ fh16154 447 SPsAtVKTRSTKAPPPHLPLSPALTRAVEGV-QYIADH----------LK 485 skdeddsvkedWkyvamvIDRlflwiFpivfvlGTlgyf<-* +d d+svkedWkyvamvIDR+flw+F+iv++lGT+g+f fh16154 486 AEDTDFSVKEDWKYVAMVIDRIFLWMFIIVCLLGTVGLF 524 //