hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-19390946/chunk_1/iprscan-20080809-19390946.nocrc
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Query sequence: fh16374
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF08441.2.fs    Integrin alpha                          486.2   2.6e-147   1
PF08441.2.ls    Integrin alpha                          408.6   8.1e-120   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF08441.2.ls      1/1       1   414 [.     1   483 []   408.6 8.1e-120
PF08441.2.fs      1/1       2   414 ..    69   483 .]   486.2 2.6e-147

Alignments of top-scoring domains:
PF08441.2.ls: domain 1 of 1, from 1 to 414: score 408.6, E = 8.1e-120
                   *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg
                                                                     
     fh16374     -    ----------------------------------------------- -    

                   ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetk.sstltrnlvl
                     +                  +r+k++l sR+ F+   ++++++t+ l+l
     fh16374     1 --K------------------ERRKSGLSSRVQFR-NQGsEPKYTQELTL 29   

                   gnqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlp
                   ++q++++C + +l+L+d  ++rDkl+PI+i++++++ +ep+++r+ ++lp
     fh16374    30 KRQKQKVCMEETLWLQD--NIRDKLRPIPITASVEI-QEPSSRRRVNSLP 76   

                   gllqPvLnqysptsitfqipFeK.nCGeDniCvaDLqLsvsfslre....
                   ++  P+Ln+++p++++  ++F+K++CG+Dn+C+++L+L ++f++re++++
     fh16374    77 EV-LPILNSDEPKTAHIDVHFLKeGCGDDNVCNSNLKLEYKFCTREgnqd 125  

                   .........gtptLvvGdtkeLtLsitvtNkP.........GEdAYeaqL
                   + +  + ++g p+Lv++d+k++ L+itvtN+P+++++++++G+dA+ea+L
     fh16374   126 kfsylpiqkGVPELVLKDQKDIALEITVTNSPsnprnptkdGDDAHEAKL 175  

                   vvtyPpgLsfskverlqnpesekplsCesnkengtrsvtCdlGnPimkag
                   ++t+P  L++s+ ++l + ++ek+lsC +n  +++++ +C+lGnP +k++
     fh16374   176 IATFPDTLTYSAYREL-RAFPEKQLSCVAN--QNGSQADCELGNP-FKRN 221  

                   sqvtftitFdvsslsglgdslefdlqatStNeepsenlndntvtleipVk
                   s+vtf++++++ ++++++ +l+++l++++t++    ++n+ ++t+++ V+
     fh16374   222 SNVTFYLVLSTTEVTFDTPDLDINLKLETTSN----QDNLAPITAKAKVV 267  

                   yeadlsisGvsepsqvffngsnwegesapeseedvGpkvpevehtYevrN
                   +e+ ls+sGv++psqv+f+g+ ++ge a++se++vG   +++e++++v+N
     fh16374   268 IELLLSVSGVAKPSQVYFGGT-VVGEQAMKSEDEVG---SLIEYEFRVIN 313  

                   lGpsL.tvpnaslniqwPyelasdsngkvpllYllevqtgsksegnvsCs
                   lG++L+++++a+lniqwP+e+   sngk +llYl++v++  k++++v+C 
     fh16374   314 LGKPLtNLGTATLNIQWPKEI---SNGK-WLLYLVKVES--KGLEKVTCE 357  

                   pqnlninplnldlsssgttprleallrnsrerqeigesevaqsykvLdCs
                   pq++ in+lnl+ s+ ++++r++++++ +++r+++ + e+  +y++L+Cs
     fh16374   358 PQKE-INSLNLTESHNSRKKREITEKQIDDNRKFSLFAER--KYQTLNCS 404  

                   ssnasClrirC<-*
                    +n+ C++irC   
     fh16374   405 -VNVNCVNIRC    414  

PF08441.2.fs: domain 1 of 1, from 2 to 414: score 486.2, E = 2.6e-147
                   *->arkkkrlisRalFldetk.sstltrnlvlgnqgseeCetfklyLrdE
                      +r+k++l sR+ F+   ++++++t+ l+l++q++++C + +l+L+d 
     fh16374     2    ERRKSGLSSRVQFR-NQGsEPKYTQELTLKRQKQKVCMEETLWLQD- 46   

                   scvrDklsPIvirlnysLesepkdgrpradlpgllqPvLnqysptsitfq
                    ++rDkl+PI+i++++++ +ep+++r+ ++lp++  P+Ln+++p++++  
     fh16374    47 -NIRDKLRPIPITASVEI-QEPSSRRRVNSLPEV-LPILNSDEPKTAHID 93   

                   ipFeK.nCGeDniCvaDLqLsvsfslre.............gtptLvvGd
                   ++F+K++CG+Dn+C+++L+L ++f++re+++++ +  + ++g p+Lv++d
     fh16374    94 VHFLKeGCGDDNVCNSNLKLEYKFCTREgnqdkfsylpiqkGVPELVLKD 143  

                   tkeLtLsitvtNkP.........GEdAYeaqLvvtyPpgLsfskverlqn
                   +k++ L+itvtN+P+++++++++G+dA+ea+L++t+P  L++s+ ++l +
     fh16374   144 QKDIALEITVTNSPsnprnptkdGDDAHEAKLIATFPDTLTYSAYREL-R 192  

                   pesekplsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglg
                    ++ek+lsC +n  +++++ +C+lGnP +k++s+vtf++++++ ++++++
     fh16374   193 AFPEKQLSCVAN--QNGSQADCELGNP-FKRNSNVTFYLVLSTTEVTFDT 239  

                   dslefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvff
                    +l+++l++++t++    ++n+ ++t+++ V++e+ ls+sGv++psqv+f
     fh16374   240 PDLDINLKLETTSN----QDNLAPITAKAKVVIELLLSVSGVAKPSQVYF 285  

                   ngsnwegesapeseedvGpkvpevehtYevrNlGpsL.tvpnaslniqwP
                   +g+ ++ge a++se++vG   +++e++++v+NlG++L+++++a+lniqwP
     fh16374   286 GGT-VVGEQAMKSEDEVG---SLIEYEFRVINLGKPLtNLGTATLNIQWP 331  

                   yelasdsngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgt
                   +e+   sngk +llYl++v++  k++++v+C pq++ in+lnl+ s+ ++
     fh16374   332 KEI---SNGK-WLLYLVKVES--KGLEKVTCEPQKE-INSLNLTESHNSR 374  

                   tprleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-*
                   ++r++++++ +++r+++ + e+  +y++L+Cs +n+ C++irC   
     fh16374   375 KKREITEKQIDDNRKFSLFAER--KYQTLNCS-VNVNCVNIRC    414  

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