hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-19453976/chunk_1/iprscan-20080809-19453976.nocrc
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Query sequence: fh16409
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00020.9.fs TNFR/NGFR cysteine-rich region                  97.5    4.7e-28   3
PF00020.9.ls TNFR/NGFR cysteine-rich region                  97.5    3.6e-26   2
PF00531.12.ls Death domain                                    79.2    1.2e-20   1
PF00531.12.fs Death domain                                    77.2    1.6e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00020.9.ls   1/2     112   154 ..     1    42 []    57.6  3.9e-14
PF00020.9.fs   2/3     112   154 ..     1    42 []    55.6  1.2e-15
PF00020.9.fs   3/3     156   192 ..     1    42 []    38.1  1.8e-10
PF00020.9.ls   2/2     156   192 ..     1    42 []    40.0  7.7e-09
PF00531.12.fs   1/1     258   341 ..     1    87 []    77.2  1.6e-20
PF00531.12.ls   1/1     258   341 ..     1    87 []    79.2  1.2e-20

Alignments of top-scoring domains:
PF00020.9.ls: domain 1 of 2, from 112 to 154: score 57.6, E = 3.9e-14
                   *->CeegvtYtdenhv.pqClsCskCepemGqvlvspCtatqnTvC<-*
                      C+eg++Ytd++h++++C++C++C++++G+++  +Ct+tqnT+C   
     fh16409   112    CQEGKEYTDKAHFsSKCRRCRLCDEGHGLEVEINCTRTQNTKC    154  

PF00020.9.fs: domain 2 of 3, from 112 to 154: score 55.6, E = 1.2e-15
                   *->CeegvtYtdenhv.pqClsCskCepemGqvlvspCtatqnTvC<-*
                      C+eg++Ytd++h++++C++C++C++++G+++  +Ct+tqnT+C   
     fh16409   112    CQEGKEYTDKAHFsSKCRRCRLCDEGHGLEVEINCTRTQNTKC    154  

PF00020.9.fs: domain 3 of 3, from 156 to 192: score 38.1, E = 1.8e-10
                   *->CeegvtYtd.enhvpqClsCskCepemGqvlvspCtatqnTvC<-*
                      C+++ +++ ++ + ++C +C+kCe+  G   +++Ct t+nT+C   
     fh16409   156    CKPN-FFCNsTVC-EHCDPCTKCEH--GI--IKECTLTSNTKC    192  

PF00020.9.ls: domain 2 of 2, from 156 to 192: score 40.0, E = 7.7e-09
                   *->CeegvtYtd.enhvpqClsCskCepemGqvlvspCtatqnTvC<-*
                      C+++ +++ ++ + ++C +C+kCe+  G   +++Ct t+nT+C   
     fh16409   156    CKPN-FFCNsTVC-EHCDPCTKCEH--GI--IKECTLTSNTKC    192  

PF00531.12.fs: domain 1 of 1, from 258 to 341: score 77.2, E = 1.6e-20
                   *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt
                      +++  ++    ++ ++ k ++rk+g+ e++Idei++ +n +d+++++
     fh16409   258    KYITTIA--GVMTLSQVKGFVRKNGVNEAKIDEIKN-DNVQDTAEQK 301  

                   yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-*
                   ++LLr+W q hGk+ +++tL++ L+k++++ +ae+++ ++   
     fh16409   302 VQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTII    341  

PF00531.12.ls: domain 1 of 1, from 258 to 341: score 79.2, E = 1.2e-20
                   *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt
                      +++  ++    ++ ++ k ++rk+g+ e++Idei++ +n +d+++++
     fh16409   258    KYITTIA--GVMTLSQVKGFVRKNGVNEAKIDEIKN-DNVQDTAEQK 301  

                   yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-*
                   ++LLr+W q hGk+ +++tL++ L+k++++ +ae+++ ++   
     fh16409   302 VQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTII    341  

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