hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-19512872/chunk_1/iprscan-20080809-19512872.nocrc
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Query sequence: fh16410
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00176.13.ls SNF2 family N-terminal domain                386.6   3.5e-113   1
PF00176.13.fs SNF2 family N-terminal domain                384.7   1.3e-112   1
PF00271.21.fs Helicase conserved C-terminal domain          83.5    8.9e-24   1
PF00271.21.ls Helicase conserved C-terminal domain          85.5    1.5e-22   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00176.13.fs   1/1     119   435 ..     1   355 []   384.7 1.3e-112
PF00176.13.ls   1/1     119   435 ..     1   355 []   386.6 3.5e-113
PF00271.21.fs   1/1     516   594 ..     1    76 []    83.5  8.9e-24
PF00271.21.ls   1/1     516   594 ..     1    76 []    85.5  1.5e-22

Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 119 to 435: score 384.7, E = 1.3e-112
                   *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay
                      YQ++GvnWL++l+k+        +l+gIL+D+MGLGKTlQ+I++la 
     fh16410   119    YQQDGVNWLAFLNKY--------KLHGILCDDMGLGKTLQSICILAG 157  

                   lkelkpkte......k.rigpfLvVcPlStldnWlnEfekwapddlnivv
                   ++  + +++ +++  +    p+LvVcP ++ ++W+ E+ k+++ +  + +
     fh16410   158 DHCHRAQEYarsklaEcMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNP 206  

                   yygdgnsrdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkde
                   ++++g  +   ++  l ++++k++     + +++sY+++r+     d+d+
     fh16410   207 LHYTGPPT---ERIRL-QHQVKRH-----NLIVASYDVVRN-----DIDF 242  

                   LkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPl
                   + +  i+++y+ilDEG H+iKN+++kl  ska+k+l+ an+R++L+GTP+
     fh16410   243 FRN--IKFNYCILDEG-HVIKNGKTKL--SKAVKQLT-ANYRIILSGTPI 286  

                   QNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLa
                   QNn+ ElwsL++FlmPg++g+         +F  ++ +pi+ ++d    a
     fh16410   287 QNNVLELWSLFDFLMPGFLGTE-------RQFAARYGKPILASRD----A 325  

                   datefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKtey
                    ++      +e+e g ++  +Lh ++ pflLRR+K+dv+ +Lpp  K+ +
     fh16410   326 RSS-----SREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPP--KIIQ 368  

                   vlfcelsklQkelYkkflkeeskdvkaindser......reggkeknegk
                    ++c ls lQ +lY +f    + + k  +d++ ++ + + e  k k++  
     fh16410   369 DYYCTLSPLQVQLYEDFA---KSRAKCDVDETVssatlsEETEKPKLKAT 415  

                   srllnlimqLrKicNfHPyLf<-*
                    ++++++++LrK+cN HP+L+   
     fh16410   416 GHVFQALQYLRKLCN-HPALV    435  

PF00176.13.ls: domain 1 of 1, from 119 to 435: score 386.6, E = 3.5e-113
                   *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay
                      YQ++GvnWL++l+k+        +l+gIL+D+MGLGKTlQ+I++la 
     fh16410   119    YQQDGVNWLAFLNKY--------KLHGILCDDMGLGKTLQSICILAG 157  

                   lkelkpkte......k.rigpfLvVcPlStldnWlnEfekwapddlnivv
                   ++  + +++ +++  +    p+LvVcP ++ ++W+ E+ k+++ +  + +
     fh16410   158 DHCHRAQEYarsklaEcMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNP 206  

                   yygdgnsrdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkde
                   ++++g  +   ++  l ++++k++     + +++sY+++r+     d+d+
     fh16410   207 LHYTGPPT---ERIRL-QHQVKRH-----NLIVASYDVVRN-----DIDF 242  

                   LkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPl
                   + +  i+++y+ilDEG H+iKN+++kl  ska+k+l+ an+R++L+GTP+
     fh16410   243 FRN--IKFNYCILDEG-HVIKNGKTKL--SKAVKQLT-ANYRIILSGTPI 286  

                   QNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLa
                   QNn+ ElwsL++FlmPg++g+         +F  ++ +pi+ ++d    a
     fh16410   287 QNNVLELWSLFDFLMPGFLGTE-------RQFAARYGKPILASRD----A 325  

                   datefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKtey
                    ++      +e+e g ++  +Lh ++ pflLRR+K+dv+ +Lpp  K+ +
     fh16410   326 RSS-----SREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPP--KIIQ 368  

                   vlfcelsklQkelYkkflkeeskdvkaindser......reggkeknegk
                    ++c ls lQ +lY +f    + + k  +d++ ++ + + e  k k++  
     fh16410   369 DYYCTLSPLQVQLYEDFA---KSRAKCDVDETVssatlsEETEKPKLKAT 415  

                   srllnlimqLrKicNfHPyLf<-*
                    ++++++++LrK+cN HP+L+   
     fh16410   416 GHVFQALQYLRKLCN-HPALV    435  

PF00271.21.fs: domain 1 of 1, from 516 to 594: score 83.5, E = 8.9e-24
                   *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG
                      + ++p + ++rl+G++++ +R  i+ +F+n++s +++L++T v+g+G
     fh16410   516    KPhLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSidVLLLTTHVGGLG 562  

                   iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ++++++++V++ + +wnp  ++Q+++Ra+R+G   
     fh16410   563 LNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG    594  

PF00271.21.ls: domain 1 of 1, from 516 to 594: score 85.5, E = 1.5e-22
                   *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG
                      + ++p + ++rl+G++++ +R  i+ +F+n++s +++L++T v+g+G
     fh16410   516    KPhLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSidVLLLTTHVGGLG 562  

                   iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ++++++++V++ + +wnp  ++Q+++Ra+R+G   
     fh16410   563 LNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG    594  

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