hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-19512872/chunk_1/iprscan-20080809-19512872.nocrc
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Query sequence: fh16410
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 116.6    2.8e-30   1
SM00490                                                  80.2    2.6e-19   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     112   320 ..     1   219 []   116.6  2.8e-30
SM00490      1/1     508   594 ..     1    86 []    80.2  2.6e-19

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 112 to 320: score 116.6, E = 2.8e-30
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTl.afllplle
                       + +lr+yQ+ +++wl   ++ + ++il++++G+GKTl+ +++ + +
     fh16410   112    INaELRKYQQDGVNWLAFLnkykLHGILCDDMGLGKTLqSICILAGD 158  

                   llkkgkplas...kkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfv
                   + ++ +++a+++  +    + Lv++P  +L+ +w++e+ k+++  +    
     fh16410   159 HCHRAQEYARsklAECMPLPSLVVCP-PTLTGHWVDEVGKFCSREY---- 203  

                   evlkvvglygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkgls
                     l+++ + g ++    + +l+   +++ +++v+++++++++++    ++
     fh16410   204 --LNPLHYTGPpTE---RIRLQHQVKRH-NLIVASYDVVRNDIdF---FR 244  

                   l.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATp
                     ++++ ilDE+H++++       g ++  + + +++  + +r++lS+Tp
     fh16410   245 NiKFNYCILDEGHVIKN-------GKTKLSKaVKQLT--ANYRIILSGTP 285  

                   peienllklflnlpelfpnpvfisvgf........tlepieqf<-*
                     i+n+  ++++      +  f+++gf ++++   +  ++++    
     fh16410   286 --IQNNVLELWS------LFDFLMPGFlgterqfaARYGKPIL    320  

SM00490: domain 1 of 1, from 508 to 594: score 80.2, E = 2.6e-19
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d++++ L + ++ p + ++rl+G++++ +R  i+ +F+++ + ++ L
     fh16410   508    DIVEHDLLKPHL-PSVTYLRLDGSIPPGQRHSIVSRFNNDPSidVLL 553  

                   vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   ++T v+++Gl+++g+d+V++ + +w+p  ++Q+++Ra+R+G   
     fh16410   554 LTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG    594  

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