# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh16714.fasta.nr -Q fh16714.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh16714, 106 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824773 sequences Expectation_n fit: rho(ln(x))= 5.4138+/-0.000179; mu= 3.1546+/- 0.010 mean_var=65.3456+/-12.678, 0's: 52 Z-trim: 55 B-trim: 39 in 1/65 Lambda= 0.158659 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088308|dbj|BAD92601.1| ligatin variant [Homo ( 106) 685 164.6 2.2e-39 gi|119613944|gb|EAW93538.1| ligatin, isoform CRA_c ( 267) 537 130.9 7.6e-29 gi|55961046|emb|CAI13535.1| ligatin [Homo sapiens] ( 271) 537 130.9 7.7e-29 gi|119613943|gb|EAW93537.1| ligatin, isoform CRA_b ( 324) 537 130.9 9e-29 gi|158957575|sp|P41214.3|LIGA_HUMAN Ligatin (Hepat ( 584) 537 131.1 1.5e-28 gi|7023377|dbj|BAA91942.1| unnamed protein product ( 584) 537 131.1 1.5e-28 gi|75041840|sp|Q5RA63.1|LIGA_PONAB Ligatin gi| ( 584) 537 131.1 1.5e-28 gi|114572164|ref|XP_514150.2| PREDICTED: ligatin [ ( 683) 535 130.6 2.4e-28 gi|7678701|gb|AAF34185.2| hepatocellular carcinoma ( 584) 532 129.9 3.3e-28 gi|109018603|ref|XP_001086581.1| PREDICTED: simila ( 511) 493 121.0 1.4e-25 gi|109018599|ref|XP_001086346.1| PREDICTED: simila ( 556) 493 121.0 1.5e-25 gi|109018597|ref|XP_001086830.1| PREDICTED: simila ( 584) 493 121.0 1.6e-25 gi|7328025|emb|CAB82330.1| hypothetical protein [H ( 389) 420 104.2 1.2e-20 gi|194210242|ref|XP_001915841.1| PREDICTED: ligati ( 584) 380 95.1 9.8e-18 gi|74005938|ref|XP_857402.1| PREDICTED: similar to ( 534) 313 79.8 3.8e-13 gi|74005936|ref|XP_536109.2| PREDICTED: similar to ( 584) 313 79.8 4.1e-13 gi|75057538|sp|Q58CR3|LIGA_BOVIN Ligatin gi|61 ( 579) 283 72.9 4.7e-11 gi|74005940|ref|XP_857442.1| PREDICTED: similar to ( 598) 250 65.4 9.1e-09 gi|148707769|gb|EDL39716.1| ligatin, isoform CRA_b ( 212) 233 61.3 5.5e-08 gi|26338536|dbj|BAC32939.1| unnamed protein produc ( 453) 233 61.4 1.1e-07 gi|26329705|dbj|BAC28591.1| unnamed protein produc ( 552) 233 61.5 1.3e-07 gi|148707770|gb|EDL39717.1| ligatin, isoform CRA_c ( 557) 233 61.5 1.3e-07 gi|1377880|gb|AAC53056.1| ligatin ( 566) 233 61.5 1.3e-07 gi|82654953|sp|Q61211|LIGA_MOUSE Ligatin gi|19 ( 570) 233 61.5 1.3e-07 gi|74148249|dbj|BAE36281.1| unnamed protein produc ( 570) 233 61.5 1.3e-07 gi|74207692|dbj|BAE40091.1| unnamed protein produc ( 570) 233 61.5 1.3e-07 gi|74213034|dbj|BAE41662.1| unnamed protein produc ( 570) 233 61.5 1.3e-07 gi|26349917|dbj|BAC38598.1| unnamed protein produc ( 570) 233 61.5 1.3e-07 gi|26331186|dbj|BAC29323.1| unnamed protein produc ( 587) 233 61.5 1.3e-07 gi|148707771|gb|EDL39718.1| ligatin, isoform CRA_d ( 593) 233 61.5 1.3e-07 gi|19353976|gb|AAH24501.1| Lgtn protein [Mus muscu ( 395) 221 58.6 6.4e-07 gi|126306932|ref|XP_001372423.1| PREDICTED: simila ( 577) 203 54.6 1.5e-05 gi|5306121|gb|AAD41909.1|AF159586_1 ligatin [Homo ( 75) 173 47.3 0.00031 gi|81883192|sp|Q5PPG7|LIGA_RAT Ligatin gi|5638 ( 570) 178 48.9 0.0008 >>gi|62088308|dbj|BAD92601.1| ligatin variant [Homo sapi (106 aa) initn: 685 init1: 685 opt: 685 Z-score: 862.3 bits: 164.6 E(): 2.2e-39 Smith-Waterman score: 685; 100.000% identity (100.000% similar) in 106 aa overlap (1-106:1-106) 10 20 30 40 50 60 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DFSRRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAR 10 20 30 40 50 60 70 80 90 100 fh1671 EDKSLSEAPEDTSTRGLNQDSTDSKTLQGITLGGEEPISPPLNLGA :::::::::::::::::::::::::::::::::::::::::::::: gi|620 EDKSLSEAPEDTSTRGLNQDSTDSKTLQGITLGGEEPISPPLNLGA 70 80 90 100 >>gi|119613944|gb|EAW93538.1| ligatin, isoform CRA_c [Ho (267 aa) initn: 536 init1: 536 opt: 537 Z-score: 673.0 bits: 130.9 E(): 7.6e-29 Smith-Waterman score: 537; 96.591% identity (96.591% similar) in 88 aa overlap (1-88:117-204) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|119 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 90 100 110 120 130 140 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 150 160 170 180 190 200 100 fh1671 TLGGEEPISPPLNLGA gi|119 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKEGELSGG 210 220 230 240 250 260 >>gi|55961046|emb|CAI13535.1| ligatin [Homo sapiens] (271 aa) initn: 536 init1: 536 opt: 537 Z-score: 672.9 bits: 130.9 E(): 7.7e-29 Smith-Waterman score: 537; 96.591% identity (96.591% similar) in 88 aa overlap (1-88:146-233) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|559 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 120 130 140 150 160 170 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 180 190 200 210 220 230 100 fh1671 TLGGEEPISPPLNLGA gi|559 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFS 240 250 260 270 >>gi|119613943|gb|EAW93537.1| ligatin, isoform CRA_b [Ho (324 aa) initn: 536 init1: 536 opt: 537 Z-score: 671.7 bits: 130.9 E(): 9e-29 Smith-Waterman score: 537; 96.591% identity (96.591% similar) in 88 aa overlap (1-88:174-261) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|119 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 150 160 170 180 190 200 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 210 220 230 240 250 260 100 fh1671 TLGGEEPISPPLNLGA gi|119 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKEGELSGG 270 280 290 300 310 320 >>gi|158957575|sp|P41214.3|LIGA_HUMAN Ligatin (Hepatocel (584 aa) initn: 565 init1: 536 opt: 537 Z-score: 667.7 bits: 131.1 E(): 1.5e-28 Smith-Waterman score: 537; 96.591% identity (96.591% similar) in 88 aa overlap (1-88:174-261) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|158 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 150 160 170 180 190 200 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 210 220 230 240 250 260 100 fh1671 TLGGEEPISPPLNLGA gi|158 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQ 270 280 290 300 310 320 >>gi|7023377|dbj|BAA91942.1| unnamed protein product [Ho (584 aa) initn: 565 init1: 536 opt: 537 Z-score: 667.7 bits: 131.1 E(): 1.5e-28 Smith-Waterman score: 537; 96.591% identity (96.591% similar) in 88 aa overlap (1-88:174-261) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|702 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 150 160 170 180 190 200 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|702 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 210 220 230 240 250 260 100 fh1671 TLGGEEPISPPLNLGA gi|702 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQ 270 280 290 300 310 320 >>gi|75041840|sp|Q5RA63.1|LIGA_PONAB Ligatin gi|5572 (584 aa) initn: 565 init1: 536 opt: 537 Z-score: 667.7 bits: 131.1 E(): 1.5e-28 Smith-Waterman score: 537; 96.591% identity (96.591% similar) in 88 aa overlap (1-88:174-261) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|750 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 150 160 170 180 190 200 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 210 220 230 240 250 260 100 fh1671 TLGGEEPISPPLNLGA gi|750 MDELLQQCFLHALKCRVKKADLPLLASTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQ 270 280 290 300 310 320 >>gi|114572164|ref|XP_514150.2| PREDICTED: ligatin [Pan (683 aa) initn: 534 init1: 534 opt: 535 Z-score: 664.2 bits: 130.6 E(): 2.4e-28 Smith-Waterman score: 535; 95.455% identity (96.591% similar) in 88 aa overlap (1-88:273-360) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::.:::::::::: gi|114 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLAMDSADLSEEKG 250 260 270 280 290 300 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 310 320 330 340 350 360 100 fh1671 TLGGEEPISPPLNLGA gi|114 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQ 370 380 390 400 410 420 >>gi|7678701|gb|AAF34185.2| hepatocellular carcinoma-ass (584 aa) initn: 560 init1: 531 opt: 532 Z-score: 661.6 bits: 129.9 E(): 3.3e-28 Smith-Waterman score: 532; 95.455% identity (96.591% similar) in 88 aa overlap (1-88:174-261) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|767 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 150 160 170 180 190 200 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 SVQMDSNLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ 210 220 230 240 250 260 100 fh1671 TLGGEEPISPPLNLGA gi|767 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQ 270 280 290 300 310 320 >>gi|109018603|ref|XP_001086581.1| PREDICTED: similar to (511 aa) initn: 517 init1: 492 opt: 493 Z-score: 614.2 bits: 121.0 E(): 1.4e-25 Smith-Waterman score: 493; 89.773% identity (93.182% similar) in 88 aa overlap (1-88:174-261) 10 20 30 fh1671 DFSRRSGNKSSPPSIAPLALDSADLSEEKG : :::::::::::::::::::::::::: gi|109 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKG 150 160 170 180 190 200 40 50 60 70 80 90 fh1671 SVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQGI :::.::::::::::: :::::::::.::: :.:::::::::::: ::::::::::::: gi|109 SVQVDSTLQGDMRHMILEGEEENGEAHQACEEKSLSEAPEDTSTGGLNQDSTDSKTLQEQ 210 220 230 240 250 260 100 fh1671 TLGGEEPISPPLNLGA gi|109 MDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQ 270 280 290 300 310 320 106 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 20:07:45 2008 done: Sat Aug 9 20:10:54 2008 Total Scan time: 497.420 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]