hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-14204416/chunk_1/iprscan-20090416-14204416.nocrc
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Query sequence: fh16728
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00002.15.fs 7 transmembrane receptor (Secretin family)     186.4    1.2e-53   1
PF00002.15.ls 7 transmembrane receptor (Secretin family)      87.3    4.4e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00002.15.ls   1/1      19   210 ..     1   293 []    87.3  4.4e-23
PF00002.15.fs   1/1      56   210 ..   118   293 .]   186.4  1.2e-53

Alignments of top-scoring domains:
PF00002.15.ls: domain 1 of 1, from 19 to 210: score 87.3, E = 4.4e-23
                   *->lllLkviytVGyslSLvaLllAiaifllFRkLhCtRNyIHlNLfaSf
                      + ++    t  +s                                  
     fh16728    19    FARMWRRATLSCSC--------------------------------- 32   

                   iLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgCk
                           + +++++++  +                            C 
     fh16728    33 --------VPLTATRPPTPT----------------------------CA 46   

                   vvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliGW
                   ++    +           + +l+L+++    Ve+++ +r+ +++Y+++GW
     fh16728    47 TASWGRQ-----------LRALHLYRMQ---VEPRNVDRGAMRFYHALGW 82   

                   GvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvilv
                   GvPav  g++++++p+  gygn+++CW+s   +++++W+++GPv+lvi++
     fh16728    83 GVPAVLLGLAVGLDPE--GYGNPDFCWISV--HEPLIWSFAGPVVLVIVM 128  

                   NfilFinilriLvqKlridslspdmgetdqyrkkrlaKStLlLlPLLGit
                   N  +F++  r+ ++  +      + ++  ++     ++S++lLl+L+  +
     fh16728   129 NGTMFLLAARTSCSTGQ------REAKKTSAL---TLRSSFLLLLLVSAS 169  

                   wvlflfapeddarGvssivflylflilnSfQGFfVavlYCFLNgEV<-*
                   w+++l+a+++     s  +f+yl+++l+ +QG+ V +l+C+LN +    
     fh16728   170 WLFGLLAVNH-----SILAFHYLHAGLCGLQGLAVLLLFCVLNADA    210  

PF00002.15.fs: domain 1 of 1, from 56 to 210: score 186.4, E = 1.2e-53
                   *->GlYLhtLlvvtVevffserkylwwYlliGWGvPavfVgiWaivrpdk
                      +l+L+++    Ve+++ +r+ +++Y+++GWGvPav  g++++++p+ 
     fh16728    56    ALHLYRMQ---VEPRNVDRGAMRFYHALGWGVPAVLLGLAVGLDPE- 98   

                   agygnegCCWlsnedngyfwWiikGPvllvilvNfilFinilriLvqKlr
                    gygn+++CW+s   +++++W+++GPv+lvi++N  +F++  r+ ++  +
     fh16728    99 -GYGNPDFCWISV--HEPLIWSFAGPVVLVIVMNGTMFLLAARTSCSTGQ 145  

                   idslspdmgetdqyrkkrlaKStLlLlPLLGitwvlflfapeddarGvss
                         + ++  ++     ++S++lLl+L+  +w+++l+a+++     s 
     fh16728   146 ------REAKKTSAL---TLRSSFLLLLLVSASWLFGLLAVNH-----SI 181  

                   ivflylflilnSfQGFfVavlYCFLNgEV<-*
                    +f+yl+++l+ +QG+ V +l+C+LN +    
     fh16728   182 LAFHYLHAGLCGLQGLAVLLLFCVLNADA    210  

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