hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-20173098/chunk_1/iprscan-20080809-20173098.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh16749 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00013.19.ls KH domain 219.9 5.4e-63 3 PF00013.19.fs KH domain 219.7 6.1e-63 4 PF07650.7.fs KH domain 49.6 3.6e-13 3 PF09005.1.fs Domain of unknown function (DUF1897) 42.3 3.2e-11 2 PF07650.7.ls KH domain 27.1 5.6e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00013.19.ls 1/3 37 101 .. 1 73 [] 75.3 1.8e-19 PF07650.7.ls 1/2 37 87 .. 1 78 [] 8.0 0.012 PF07650.7.fs 1/3 37 66 .. 1 30 [. 17.4 0.00039 PF00013.19.fs 2/4 37 101 .. 1 73 [] 73.4 5.7e-20 PF00013.19.fs 3/4 127 189 .. 1 73 [] 67.4 2.7e-18 PF00013.19.ls 2/3 127 189 .. 1 73 [] 69.3 1.1e-17 PF00013.19.fs 4/4 228 293 .. 1 73 [] 73.4 5.6e-20 PF00013.19.ls 3/3 228 293 .. 1 73 [] 75.3 1.8e-19 PF07650.7.fs 3/3 228 261 .. 1 41 [. 21.5 2.8e-05 PF07650.7.ls 2/2 228 276 .. 1 78 [] 19.1 0.00059 PF09005.1.fs 2/2 451 472 .. 1 22 [. 31.6 3.7e-08 Alignments of top-scoring domains: PF00013.19.ls: domain 1 of 3, from 37 to 101: score 75.3, E = 1.8e-19 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped +++i ip+sk+G++IGkgG+tIk+++e+ G+k + +dg fh16749 37 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-------- 75 plngsgertvtIsGtpeavekAkkli<-* p+n++ +++ +I+G+p +v++Ak+++ fh16749 76 PQNTGADKPLRITGDPYKVQQAKEMV 101 PF07650.7.ls: domain 1 of 2, from 37 to 87: score 8.0, E = 0.012 *->avivvirtsqpGivIGKgGsnIkklgkelrklltgkkvqieviEySd ++ i +s+ G+vIGKgG++Ik+l + ++ + + i fh16749 37 VQEIMIPASKAGLVIGKGGETIKQLQERAGVK-------MVMIQ--- 73 eeFgkkVfLeLwVKVkknWvknpellaqLga<-* + +n ++++ L fh16749 74 -----------------DGPQNTGADKPLRI 87 PF07650.7.fs: domain 1 of 3, from 37 to 66: score 17.4, E = 0.00039 *->avivvirtsqpGivIGKgGsnIkklgkelr<-* ++ i +s+ G+vIGKgG++Ik+l + ++ fh16749 37 VQEIMIPASKAGLVIGKGGETIKQLQERAG 66 PF00013.19.fs: domain 2 of 4, from 37 to 101: score 73.4, E = 5.7e-20 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped +++i ip+sk+G++IGkgG+tIk+++e+ G+k + +dg fh16749 37 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDG-------- 75 plngsgertvtIsGtpeavekAkkli<-* p+n++ +++ +I+G+p +v++Ak+++ fh16749 76 PQNTGADKPLRITGDPYKVQQAKEMV 101 PF00013.19.fs: domain 3 of 4, from 127 to 189: score 67.4, E = 2.7e-18 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped i + ip +vG +IG++G++Ik+I+++ G++I++ +d+ fh16749 127 GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-------- 165 plngsgertvtIsGtpeavekAkkli<-* +++er+ +I+G+p+++++A++ i fh16749 166 G--TTPERIAQITGPPDRCQHAAEII 189 PF00013.19.ls: domain 2 of 3, from 127 to 189: score 69.3, E = 1.1e-17 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped i + ip +vG +IG++G++Ik+I+++ G++I++ +d+ fh16749 127 GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-------- 165 plngsgertvtIsGtpeavekAkkli<-* +++er+ +I+G+p+++++A++ i fh16749 166 G--TTPERIAQITGPPDRCQHAAEII 189 PF00013.19.fs: domain 4 of 4, from 228 to 293: score 73.4, E = 5.6e-20 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++ +++p+ k G+iIGkgG+tIk I +++Ga+I++ +++ p++ fh16749 228 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-----PPN 269 plngsgertvtIsGtpeavekAkkli<-* + +++ + +tI+Gtp++++ A++li fh16749 270 A--DPNMKLFTIRGTPQQIDYARQLI 293 PF00013.19.ls: domain 3 of 3, from 228 to 293: score 75.3, E = 1.8e-19 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++ +++p+ k G+iIGkgG+tIk I +++Ga+I++ +++ p++ fh16749 228 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-----PPN 269 plngsgertvtIsGtpeavekAkkli<-* + +++ + +tI+Gtp++++ A++li fh16749 270 A--DPNMKLFTIRGTPQQIDYARQLI 293 PF07650.7.fs: domain 3 of 3, from 228 to 261: score 21.5, E = 2.8e-05 *->avivvirtsqpGivIGKgGsnIkklgkelrklltgkkvqie<-* ++++ t++ G++IGKgG++Ik + ++ + + ie fh16749 228 EFNFIVPTGKTGLIIGKGGETIKSISQQSGAR-------IE 261 PF07650.7.ls: domain 2 of 2, from 228 to 276: score 19.1, E = 0.00059 *->avivvirtsqpGivIGKgGsnIkklgkelrklltgkkvqieviEySd ++++ t++ G++IGKgG++Ik + ++ + + ie fh16749 228 EFNFIVPTGKTGLIIGKGGETIKSISQQSGAR-------IELQR--- 264 eeFgkkVfLeLwVKVkknWvknpellaqLga<-* p+++ fh16749 265 -------------------NPPPNADPNMKL 276 PF09005.1.fs: domain 2 of 2, from 451 to 472: score 31.6, E = 3.7e-08 *->TvnPvTGepDYSAQWAEYYRSi<-* T+ P G+pDYSA+WAEYYR + fh16749 451 TGAPPGGQPDYSAAWAEYYRQQ 472 //