hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-20301716/chunk_1/iprscan-20080809-20301716.nocrc
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Query sequence: fh17076
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00194                                                  25.8    4.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00194    1/1     680   824 .]     1   308 []    25.8  4.2e-08

Alignments of top-scoring domains:
SM00194: domain 1 of 1, from 680 to 824: score 25.8, E = 4.2e-08
                   *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi
                       l++E++ l++++ +++        +c +a+ + N+  +KNR++ d 
     fh17076   680    RLAKEWQALCAYQAEPN--------TCATAQGEGNI--KKNRHP-DF 715  

                   lpyDhtRVkLkppdgesdseegsDYINAnyidgy.kepkayIaTQGPLps
                   lpyDh R+kLk + +     + sDYINA+ i  ++++  ayIaTQGPL +
     fh17076   716 LPYDHARIKLKVESSP----SRSDYINASPIIEHdPRMPAYIATQGPLSH 761  

                   TveDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPeeslty
                   T++DFW+MVwe +++vIVMLt lvE         g++ C++YWP+e    
     fh17076   762 TIADFWQMVWESGCTVIVMLTPLVED--------GVKQCDRYWPDE---- 799  

                   GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn
                   G            +  y++++ +  ++++                     
     fh17076   800 G-----------AS-LYHVYEVSRAPQQG--------------------- 816  

                   WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi
                     D g+              +++                           
     fh17076   817 --DNGCG-------------KSR--------------------------- 824  

                   vVHCSAGvGRTGTFiaidillqqleavdifdiVkelRsqRpgmVQTeeQY
                                                                     
     fh17076     - -------------------------------------------------- -    

                   iFlyraileylk<-*
                                  
     fh17076     - ------------    -    

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