hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-14311996/chunk_1/iprscan-20090416-14311996.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh17222s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  31.0    0.00017   2
SM00184                                                  26.8     0.0029   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2    1366  1511 ..     1    92 []    23.0    0.041
SM00382    2/2    1715  1864 ..     1    92 []     7.9      3.7
SM00184    1/1    2951  2989 ..     1    23 []    26.8   0.0029

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 1366 to 1511: score 23.0, E = 0.041
                   *->pgevvllvGppGsGKTTlaralarllgp........gviyidge...
                       g +v+++G++G+GKT l++ l  l   +++ ++ + v++  g+  +
   fh17222s1  1366    CGIPVIIMGETGCGKTRLIKFLSDLRRGgtnadtikLVKVHGGTtad 1412 

                   .ggqrirlalalark........dvlllDEitslld..............
                       r+r a + a +++++++ + +l++DE+++    +  ++ + ++  +
   fh17222s1  1413 mIYSRVREAENVAFAnkdqhqldTILFFDEANTTEAiscikevlcdhmvd 1462 

                   .........vtviattn...........dldpallrrrfdrrivllril<
                   ++ + +++++++ia++n+ ++++++    l +a l  r++ +   +r + 
   fh17222s1  1463 gqplaedsgLHIIAACNpyrkhseemicRLESAGLGYRVSMEETADRLG  1511 

                   -*
                     
   fh17222s1     -    -    

SM00382: domain 2 of 2, from 1715 to 1864: score 7.9, E = 3.7
                   *->pgevvllvGppGsGKTTlaralarllgp............gviyidg
                       + +++lvG pGs K+     +a  ++ +   ++  ++ + v +++ 
   fh17222s1  1715    LKIPLFLVGKPGSSKSLAKTIVADAMQGpaaysdlfrslkQVHLVSF 1761 

                   e...............ggqrirlalalark.dvlllDEitslld......
                   + + ++  ++  +  ++ +r+++ ++l ++ +v++lDE++ + d+ +  +
   fh17222s1  1762 QcsphstpqgiistfrQCARFQQGKDLQQYvSVVVLDEVGLAEDspkmpl 1811 

                   .....................vtviattn...dldpallrrrfdrrivll
                   + ++ +++++  +++   +++v +++++n   d+ +++  + ++r    +
   fh17222s1  1812 ktlhplledgcieddpaphkkVGFVGISNwalDPAKMNRGIFVSRGSPNE 1861 

                   ril<-*
                   + l   
   fh17222s1  1862 TEL    1864 

SM00184: domain 1 of 1, from 2951 to 2989: score 26.8, E = 0.0029
                   *->CpICle....pvvlpCgH.FCr.Ci..........CPlC<-*
                      C+ICl + ++pv+lpC H  C +C++ +  +++  CP C   
   fh17222s1  2951    CSICLGdakdPVCLPCDHvHCLrCLrawfaseqmiCPYC    2989 

//