# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofh17232.fasta.nr -Q fh17232.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fh17232, 180 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823320 sequences Expectation_n fit: rho(ln(x))= 4.6136+/-0.000185; mu= 11.0391+/- 0.010 mean_var=72.5236+/-13.808, 0's: 37 Z-trim: 39 B-trim: 91 in 2/65 Lambda= 0.150603 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088320|dbj|BAD92607.1| jagged 2 isoform b pre ( 180) 1366 305.0 3.4e-81 gi|21704279|ref|NP_660142.1| jagged 2 isoform b pr (1200) 644 149.0 2.1e-33 gi|2605947|gb|AAB84216.1| hJAG2.del-E6 [Homo sapie (1200) 644 149.0 2.1e-33 gi|2765402|emb|CAA74706.1| jagged2 protein [Homo s (1223) 644 149.0 2.1e-33 gi|2605945|gb|AAB84215.1| Jagged2 [Homo sapiens] (1238) 644 149.0 2.2e-33 gi|2432002|gb|AAB71189.1| Jagged 2 [Homo sapiens] (1238) 644 149.0 2.2e-33 gi|116242598|sp|Q9Y219.3|JAG2_HUMAN Protein jagged (1238) 644 149.0 2.2e-33 gi|2197067|gb|AAB61285.1| Jagged 2 [Homo sapiens] (1238) 644 149.0 2.2e-33 gi|119602306|gb|EAW81900.1| jagged 2, isoform CRA_ (1247) 644 149.0 2.2e-33 gi|114655133|ref|XP_510206.2| PREDICTED: jagged 2 (1016) 634 146.7 8.5e-33 gi|109085055|ref|XP_001097477.1| PREDICTED: jagged (1062) 620 143.7 7.2e-32 gi|119914230|ref|XP_595574.3| PREDICTED: similar t (1045) 530 124.1 5.5e-26 gi|20138454|sp|P97607.1|JAG2_RAT Protein jagged-2 (1202) 525 123.1 1.3e-25 gi|149044030|gb|EDL97412.1| jagged 2, isoform CRA_ (1221) 525 123.1 1.3e-25 gi|149044029|gb|EDL97411.1| jagged 2, isoform CRA_ (1228) 525 123.1 1.3e-25 gi|34935270|ref|XP_343120.1| PREDICTED: similar to (1247) 525 123.1 1.3e-25 gi|109480053|ref|XP_001073124.1| PREDICTED: simila (1312) 525 123.2 1.4e-25 gi|148686628|gb|EDL18575.1| jagged 2, isoform CRA_ (1077) 512 120.2 8.4e-25 gi|148686629|gb|EDL18576.1| jagged 2, isoform CRA_ (1194) 512 120.3 9e-25 gi|189442095|gb|AAI67222.1| Jagged 2 [synthetic co (1247) 512 120.3 9.3e-25 gi|20138777|sp|Q9QYE5.1|JAG2_MOUSE Protein jagged- (1247) 512 120.3 9.3e-25 gi|194225423|ref|XP_001494813.2| PREDICTED: simila (1108) 502 118.1 3.9e-24 gi|126290033|ref|XP_001368393.1| PREDICTED: simila (1240) 415 99.2 2e-18 gi|149617168|ref|XP_001520018.1| PREDICTED: simila (1072) 377 90.9 5.7e-16 gi|118092252|ref|XP_001235689.1| PREDICTED: simila (1300) 352 85.6 2.8e-14 gi|2313049|dbj|BAA21713.1| C-Serrate-2 [Gallus gal (1212) 334 81.6 4e-13 gi|73964553|ref|XP_548004.2| PREDICTED: similar to (1098) 330 80.7 6.8e-13 gi|47216760|emb|CAG03764.1| unnamed protein produc (1128) 320 78.5 3.1e-12 gi|55251259|emb|CAH69088.1| jagged2 [Danio rerio] (1216) 303 74.9 4.3e-11 gi|15799278|gb|AAL08215.1|AF229450_1 jagged2 [Dani (1216) 303 74.9 4.3e-11 gi|15799276|gb|AAL08214.1|AF229449_1 jagged2 [Dani (1254) 303 74.9 4.4e-11 gi|4063639|gb|AAC98354.1| serrateB [Danio rerio] (1254) 303 74.9 4.4e-11 gi|190338609|gb|AAI63889.1| Jagged 2 [Danio rerio] (1254) 303 74.9 4.4e-11 gi|55251258|emb|CAH69087.1| jagged2 [Danio rerio] (1254) 303 74.9 4.4e-11 gi|189527051|ref|XP_694817.3| PREDICTED: similar t (1196) 297 73.6 1e-10 gi|47229014|emb|CAG09529.1| unnamed protein produc (1364) 237 60.6 9.6e-07 gi|126304341|ref|XP_001382123.1| PREDICTED: simila (1217) 231 59.2 2.2e-06 gi|14290605|gb|AAH09082.1| Jag2 protein [Mus muscu ( 300) 223 56.9 2.8e-06 gi|1684890|gb|AAC50909.1| soluble protein Jagged [ ( 263) 215 55.1 8.4e-06 gi|114680943|ref|XP_001169542.1| PREDICTED: jagged (1006) 221 57.0 8.6e-06 gi|114680941|ref|XP_001169623.1| PREDICTED: jagged (1183) 221 57.1 9.7e-06 gi|114680937|ref|XP_001169666.1| PREDICTED: jagged (1218) 221 57.1 9.9e-06 gi|114680939|ref|XP_001169642.1| PREDICTED: jagged (1221) 221 57.1 9.9e-06 gi|2130537|gb|AAC51323.1| transmembrane protein Ja (1214) 215 55.8 2.4e-05 gi|1438937|gb|AAB39007.1| transmembrane protein Ja (1218) 215 55.8 2.4e-05 gi|2228793|gb|AAC51731.1| Jagged1 [Homo sapiens] (1218) 215 55.8 2.4e-05 gi|20455033|sp|P78504.3|JAG1_HUMAN Protein jagged- (1218) 215 55.8 2.4e-05 gi|68533511|gb|AAH98393.1| Jagged 1 (Alagille synd (1218) 215 55.8 2.4e-05 gi|109092890|ref|XP_001116216.1| PREDICTED: jagged (1220) 215 55.8 2.4e-05 gi|14278869|dbj|BAB59049.1| X-Serrate-1 protein [X (1214) 213 55.3 3.3e-05 >>gi|62088320|dbj|BAD92607.1| jagged 2 isoform b precurs (180 aa) initn: 1366 init1: 1366 opt: 1366 Z-score: 1612.9 bits: 305.0 E(): 3.4e-81 Smith-Waterman score: 1366; 100.000% identity (100.000% similar) in 180 aa overlap (1-180:1-180) 10 20 30 40 50 60 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLTLLCVPAQVWCGWKPCLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLTLLCVPAQVWCGWKPCLLA 10 20 30 40 50 60 70 80 90 100 110 120 fh1723 GQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPSTPCLPRSGHLDNNCARLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPSTPCLPRSGHLDNNCARLT 70 80 90 100 110 120 130 140 150 160 170 180 fh1723 LHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGPGWLSRVTLGHREWPCGVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGPGWLSRVTLGHREWPCGVR 130 140 150 160 170 180 >>gi|21704279|ref|NP_660142.1| jagged 2 isoform b precur (1200 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.8 bits: 149.0 E(): 2.1e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:838-946) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|217 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 810 820 830 840 850 860 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 870 880 890 900 910 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|217 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 920 930 940 950 960 970 >>gi|2605947|gb|AAB84216.1| hJAG2.del-E6 [Homo sapiens] (1200 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.8 bits: 149.0 E(): 2.1e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:838-946) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|260 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 810 820 830 840 850 860 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|260 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 870 880 890 900 910 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|260 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 920 930 940 950 960 970 >>gi|2765402|emb|CAA74706.1| jagged2 protein [Homo sapie (1223 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.7 bits: 149.0 E(): 2.1e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:861-969) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|276 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 840 850 860 870 880 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|276 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 890 900 910 920 930 940 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|276 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 950 960 970 980 990 1000 >>gi|2605945|gb|AAB84215.1| Jagged2 [Homo sapiens] g (1238 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.7 bits: 149.0 E(): 2.2e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:876-984) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|260 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 850 860 870 880 890 900 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|260 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 910 920 930 940 950 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|260 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 960 970 980 990 1000 1010 >>gi|2432002|gb|AAB71189.1| Jagged 2 [Homo sapiens] (1238 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.7 bits: 149.0 E(): 2.2e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:876-984) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|243 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 850 860 870 880 890 900 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|243 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 910 920 930 940 950 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|243 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 960 970 980 990 1000 1010 >>gi|116242598|sp|Q9Y219.3|JAG2_HUMAN Protein jagged-2 p (1238 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.7 bits: 149.0 E(): 2.2e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:876-984) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|116 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 850 860 870 880 890 900 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 910 920 930 940 950 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|116 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 960 970 980 990 1000 1010 >>gi|2197067|gb|AAB61285.1| Jagged 2 [Homo sapiens] (1238 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.7 bits: 149.0 E(): 2.2e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:876-984) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|219 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 850 860 870 880 890 900 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 910 920 930 940 950 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|219 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 960 970 980 990 1000 1010 >>gi|119602306|gb|EAW81900.1| jagged 2, isoform CRA_b [H (1247 aa) initn: 644 init1: 644 opt: 644 Z-score: 754.6 bits: 149.0 E(): 2.2e-33 Smith-Waterman score: 646; 76.271% identity (79.661% similar) in 118 aa overlap (13-130:885-993) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|119 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 860 870 880 890 900 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 910 920 930 940 950 960 110 120 130 140 150 160 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQVRGLVASELAEATRRHLLVAWRKPSPAGQGGP :::::::::::::::::::::::::::: gi|119 TPCLPRSGHLDNNCARLTLHFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 970 980 990 1000 1010 1020 >>gi|114655133|ref|XP_510206.2| PREDICTED: jagged 2 [Pan (1016 aa) initn: 634 init1: 634 opt: 634 Z-score: 744.0 bits: 146.7 E(): 8.5e-33 Smith-Waterman score: 655; 57.219% identity (64.706% similar) in 187 aa overlap (13-178:461-637) 10 20 30 40 fh1723 GVGWALGLTDLGGVPPWHGARACLWVLICVPASDPPVRLRLT :.: ::. :: : : gi|114 INGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSS---WVEDCNSCRCLDGRRD-- 440 450 460 470 480 50 60 70 80 90 100 fh1723 LLCVPAQVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS : ..::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 --C--SKVWCGWKPCLLAGQPEALSAQCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPS 490 500 510 520 530 540 110 120 130 140 150 fh1723 TPCLPRSGHLDNNCARLTLHFNRDHVPQ----------VRGLVASELAEATRRHLLVAWR :::::::::::::::::::.:::::::: .:.: :.. . : .:. : gi|114 TPCLPRSGHLDNNCARLTLRFNRDHVPQGTTVGAICSGIRSLPATRAVARDRLLVLLCDR 550 560 570 580 590 600 160 170 180 fh1723 KPSPAG---------QGG--PGWLSRVTLGHREWPCGVR : :. : : ::: .: : : :: gi|114 ASSGASAVEVAVVSAQWGAAPGWALGPVLC-RSWLCGTEAPARLVLVRKDCGQACLPQLG 610 620 630 640 650 660 gi|114 LRPLAVHAADPWNCSLGPASMREMQGCGVEPASPAAASSPGPLLCFCLCVPTSQAAGESS 670 680 690 700 710 720 180 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 20:34:06 2008 done: Sat Aug 9 20:37:01 2008 Total Scan time: 610.970 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]