hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-20501954/chunk_1/iprscan-20080809-20501954.nocrc
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Query sequence: fh17343
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         126.6    6.3e-35   6
PF00096.16.fs Zinc finger, C2H2 type                         114.8    2.2e-31   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   2/6     151   173 ..     1    24 []    30.1    3e-06
PF00096.16.ls   2/6     151   173 ..     1    24 []    32.1  1.9e-06
PF00096.16.fs   3/6     179   201 ..     1    24 []    26.5  2.3e-05
PF00096.16.ls   3/6     179   201 ..     1    24 []    28.5  2.2e-05
PF00096.16.fs   4/6     212   235 ..     1    24 []    26.0  3.1e-05
PF00096.16.ls   4/6     212   235 ..     1    24 []    28.0  3.1e-05

Alignments of top-scoring domains:
PF00096.16.fs: domain 2 of 6, from 151 to 173: score 30.1, E = 3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg sF++k+nL rH++ H   
     fh17343   151    FHCN-QCGASFTQKGNLLRHIKLH    173  

PF00096.16.ls: domain 2 of 6, from 151 to 173: score 32.1, E = 1.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg sF++k+nL rH++ H   
     fh17343   151    FHCN-QCGASFTQKGNLLRHIKLH    173  

PF00096.16.fs: domain 3 of 6, from 179 to 201: score 26.5, E = 2.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp  C+++++r++ L+ HlrtH   
     fh17343   179    FKCP-FCNYACRRRDALTGHLRTH    201  

PF00096.16.ls: domain 3 of 6, from 179 to 201: score 28.5, E = 2.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp  C+++++r++ L+ HlrtH   
     fh17343   179    FKCP-FCNYACRRRDALTGHLRTH    201  

PF00096.16.fs: domain 4 of 6, from 212 to 235: score 26.0, E = 3.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+ +Cg+s++++s+L+ H+ + H   
     fh17343   212    YKCN-YCGRSYKQQSTLEEHKERcH    235  

PF00096.16.ls: domain 4 of 6, from 212 to 235: score 28.0, E = 3.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+ +Cg+s++++s+L+ H+ + H   
     fh17343   212    YKCN-YCGRSYKQQSTLEEHKERcH    235  

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