hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-20501954/chunk_1/iprscan-20080809-20501954.nocrc
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Query sequence: fh17343
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 141.3    1.1e-37   6

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/6     123   145 ..     1    23 []    21.9    0.089
SM00355      2/6     151   173 ..     1    23 []    30.7   0.0002
SM00355      3/6     179   201 ..     1    23 []    30.7  0.00021
SM00355      4/6     212   235 ..     1    23 []    24.6    0.014
SM00355      5/6     494   516 ..     1    23 []    13.8      8.8
SM00355      6/6     522   546 ..     1    23 []    19.7     0.42

Alignments of top-scoring domains:
SM00355: domain 1 of 6, from 123 to 145: score 21.9, E = 0.089
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cg+++  ++ L  H r+H   
     fh17343   123    LKCDV-CGMVCIGPnVLMVHKRSH    145  

SM00355: domain 2 of 6, from 151 to 173: score 30.7, E = 0.0002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg sf++k++L rH++ H   
     fh17343   151    FHCNQ-CGASFTQKgNLLRHIKLH    173  

SM00355: domain 3 of 6, from 179 to 201: score 30.7, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp+ C++ +++++aL+ H+r+H   
     fh17343   179    FKCPF-CNYACRRRdALTGHLRTH    201  

SM00355: domain 4 of 6, from 212 to 235: score 24.6, E = 0.014
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC++ Cg+s+++++ L++H  + H   
     fh17343   212    YKCNY-CGRSYKQQsTLEEHKErCH    235  

SM00355: domain 5 of 6, from 494 to 516: score 13.8, E = 8.8
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C   f ++  ++ Hm  H   
     fh17343   494    FKCEH-CRILFLDHvMFTIHMGCH    516  

SM00355: domain 6 of 6, from 522 to 546: score 19.7, E = 0.42
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+i Cg++  ++ ++  H+ ++ H   
     fh17343   522    FECNI-CGYHSQDRyEFSSHIVrgEH    546  

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