hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-20562655/chunk_1/iprscan-20080809-20562655.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fh17353 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 369.0 6.8e-108 11 PF00096.16.fs Zinc finger, C2H2 type 347.8 1.6e-101 12 PF01352.17.fs KRAB box 91.7 1.9e-25 1 PF01352.17.ls KRAB box 93.7 5e-25 1 PF01096.9.fs Transcription factor S-II (TFIIS) 43.6 8.5e-13 11 PF01286.9.fs XPA protein N-terminal 30.0 8.9e-08 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 4 44 .. 1 41 [] 93.7 5e-25 PF01352.17.fs 1/1 4 44 .. 1 41 [] 91.7 1.9e-25 PF00096.16.ls 1/11 180 202 .. 1 24 [] 33.8 5.7e-07 PF00096.16.fs 2/12 180 202 .. 1 24 [] 31.8 1.1e-06 PF00096.16.ls 2/11 208 230 .. 1 24 [] 32.5 1.4e-06 PF00096.16.fs 3/12 208 230 .. 1 24 [] 30.5 2.3e-06 PF00096.16.ls 3/11 236 258 .. 1 24 [] 34.7 3e-07 PF00096.16.fs 4/12 236 258 .. 1 24 [] 32.7 6.6e-07 PF00096.16.fs 5/12 264 286 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 4/11 264 286 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 6/12 292 314 .. 1 24 [] 32.3 8.6e-07 PF00096.16.ls 5/11 292 314 .. 1 24 [] 34.2 4.1e-07 PF00096.16.ls 6/11 320 342 .. 1 24 [] 36.7 7.6e-08 PF00096.16.fs 7/12 320 342 .. 1 24 [] 34.7 2.1e-07 PF00096.16.ls 7/11 348 370 .. 1 24 [] 33.1 8.8e-07 PF00096.16.fs 8/12 348 370 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 8/11 376 398 .. 1 24 [] 34.2 4.1e-07 PF00096.16.fs 9/12 376 398 .. 1 24 [] 32.3 8.6e-07 PF00096.16.ls 9/11 404 426 .. 1 24 [] 33.2 8.7e-07 PF00096.16.fs 10/12 404 426 .. 1 24 [] 31.2 1.6e-06 PF00096.16.fs 11/12 432 454 .. 1 24 [] 30.6 2.2e-06 PF00096.16.ls 10/11 432 454 .. 1 24 [] 32.6 1.3e-06 PF00096.16.fs 12/12 460 482 .. 1 24 [] 29.9 3.3e-06 PF00096.16.ls 11/11 460 482 .. 1 24 [] 31.9 2.1e-06 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 4 to 44: score 93.7, E = 5e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+F+qEEW+lLd aQr LYr+VMlEN+ L+Slg fh17353 4 VTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLG 44 PF01352.17.fs: domain 1 of 1, from 4 to 44: score 91.7, E = 1.9e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+F+qEEW+lLd aQr LYr+VMlEN+ L+Slg fh17353 4 VTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLG 44 PF00096.16.ls: domain 1 of 11, from 180 to 202: score 33.8, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +k+ L +H+r H fh17353 180 YKCS-ECGKAFGQKYLLVQHQRLH 202 PF00096.16.fs: domain 2 of 12, from 180 to 202: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +k+ L +H+r H fh17353 180 YKCS-ECGKAFGQKYLLVQHQRLH 202 PF00096.16.ls: domain 2 of 11, from 208 to 230: score 32.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F++ snL H+ +H fh17353 208 YECS-ECGKLFRDMSNLFIHQIVH 230 PF00096.16.fs: domain 3 of 12, from 208 to 230: score 30.5, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F++ snL H+ +H fh17353 208 YECS-ECGKLFRDMSNLFIHQIVH 230 PF00096.16.ls: domain 3 of 11, from 236 to 258: score 34.7, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ CgksFsr+++L H+r+H fh17353 236 YGCS-NCGKSFSRNAHLIEHQRVH 258 PF00096.16.fs: domain 4 of 12, from 236 to 258: score 32.7, E = 6.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ CgksFsr+++L H+r+H fh17353 236 YGCS-NCGKSFSRNAHLIEHQRVH 258 PF00096.16.fs: domain 5 of 12, from 264 to 286: score 30.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L +H ++H fh17353 264 FTCS-ECGKAFRHNSTLVQHHKIH 286 PF00096.16.ls: domain 4 of 11, from 264 to 286: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L +H ++H fh17353 264 FTCS-ECGKAFRHNSTLVQHHKIH 286 PF00096.16.fs: domain 6 of 12, from 292 to 314: score 32.3, E = 8.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fs +s+L +H+r+H fh17353 292 YECS-ECGKLFSFNSSLMKHQRVH 314 PF00096.16.ls: domain 5 of 11, from 292 to 314: score 34.2, E = 4.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fs +s+L +H+r+H fh17353 292 YECS-ECGKLFSFNSSLMKHQRVH 314 PF00096.16.ls: domain 6 of 11, from 320 to 342: score 36.7, E = 7.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk +s+ksnL +H+r+H fh17353 320 YKCS-ECGKFYSHKSNLIKHWRVH 342 PF00096.16.fs: domain 7 of 12, from 320 to 342: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk +s+ksnL +H+r+H fh17353 320 YKCS-ECGKFYSHKSNLIKHWRVH 342 PF00096.16.ls: domain 7 of 11, from 348 to 370: score 33.1, E = 8.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk F++ s+L +H+++H fh17353 348 YKCS-DCGKFFTQCSSLMQHQKVH 370 PF00096.16.fs: domain 8 of 12, from 348 to 370: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ dCgk F++ s+L +H+++H fh17353 348 YKCS-DCGKFFTQCSSLMQHQKVH 370 PF00096.16.ls: domain 8 of 11, from 376 to 398: score 34.2, E = 4.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+ +s+L rH+r+H fh17353 376 FKCN-ECGRFFRENSTLVRHQRVH 398 PF00096.16.fs: domain 9 of 12, from 376 to 398: score 32.3, E = 8.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+ +s+L rH+r+H fh17353 376 FKCN-ECGRFFRENSTLVRHQRVH 398 PF00096.16.ls: domain 9 of 11, from 404 to 426: score 33.2, E = 8.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk Fs++s+L +H+++H fh17353 404 YECR-ECGKFFSQSSTLMQHRKVH 426 PF00096.16.fs: domain 10 of 12, from 404 to 426: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk Fs++s+L +H+++H fh17353 404 YECR-ECGKFFSQSSTLMQHRKVH 426 PF00096.16.fs: domain 11 of 12, from 432 to 454: score 30.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+ +s+L +H+r+H fh17353 432 FKCN-ECGRLFRENSSLVKHQRVH 454 PF00096.16.ls: domain 10 of 11, from 432 to 454: score 32.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+ +s+L +H+r+H fh17353 432 FKCN-ECGRLFRENSSLVKHQRVH 454 PF00096.16.fs: domain 12 of 12, from 460 to 482: score 29.9, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F+++s+L +H+r+H fh17353 460 YECR-ECGKFFRHNSSLFKHRRIH 482 PF00096.16.ls: domain 11 of 11, from 460 to 482: score 31.9, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk F+++s+L +H+r+H fh17353 460 YECR-ECGKFFRHNSSLFKHRRIH 482 //