hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-20562655/chunk_1/iprscan-20080809-20562655.nocrc
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Query sequence: fh17353
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 297.4      1e-84  11
SM00349                                                 112.4    5.3e-29   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1       4    64 ..     1    62 []   112.4  5.3e-29
SM00355      1/11    180   202 ..     1    23 []    29.1   0.0006
SM00355      2/11    208   230 ..     1    23 []    26.6   0.0035
SM00355      3/11    236   258 ..     1    23 []    27.5   0.0019
SM00355      4/11    264   286 ..     1    23 []    25.9   0.0056
SM00355      5/11    292   314 ..     1    23 []    26.0   0.0052
SM00355      6/11    320   342 ..     1    23 []    28.6  0.00085
SM00355      7/11    348   370 ..     1    23 []    25.1   0.0095
SM00355      8/11    376   398 ..     1    23 []    27.9   0.0014
SM00355      9/11    404   426 ..     1    23 []    26.8    0.003
SM00355     10/11    432   454 ..     1    23 []    27.8   0.0015
SM00355     11/11    460   482 ..     1    23 []    26.1   0.0049

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 4 to 64: score 112.4, E = 5.3e-29
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtFeDVAV+FsqEEW++LD aQr LYR+VMlEN+  L+SLG ++ sk
     fh17353     4    VTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLG-LASSK 49   

                   pdliskLEqgeEpwi<-*
                     +i++LE  eEp +   
     fh17353    50 THEITQLESWEEPFM    64   

SM00355: domain 1 of 11, from 180 to 202: score 29.1, E = 0.0006
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f +k  L++H+r H   
     fh17353   180    YKCSE-CGKAFGQKyLLVQHQRLH    202  

SM00355: domain 2 of 11, from 208 to 230: score 26.6, E = 0.0035
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ ++L  H+ vH   
     fh17353   208    YECSE-CGKLFRDMsNLFIHQIVH    230  

SM00355: domain 3 of 11, from 236 to 258: score 27.5, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+  Cgksfs+  +L++H+rvH   
     fh17353   236    YGCSN-CGKSFSRNaHLIEHQRVH    258  

SM00355: domain 4 of 11, from 264 to 286: score 25.9, E = 0.0056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk f++ + L++H ++H   
     fh17353   264    FTCSE-CGKAFRHNsTLVQHHKIH    286  

SM00355: domain 5 of 11, from 292 to 314: score 26.0, E = 0.0052
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs  ++L +H+rvH   
     fh17353   292    YECSE-CGKLFSFNsSLMKHQRVH    314  

SM00355: domain 6 of 11, from 320 to 342: score 28.6, E = 0.00085
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk +s+k++L++H rvH   
     fh17353   320    YKCSE-CGKFYSHKsNLIKHWRVH    342  

SM00355: domain 7 of 11, from 348 to 370: score 25.1, E = 0.0095
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk f++ ++L +H++vH   
     fh17353   348    YKCSD-CGKFFTQCsSLMQHQKVH    370  

SM00355: domain 8 of 11, from 376 to 398: score 27.9, E = 0.0014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cg+ f+  + L+rH+rvH   
     fh17353   376    FKCNE-CGRFFRENsTLVRHQRVH    398  

SM00355: domain 9 of 11, from 404 to 426: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk fs+ + L +H +vH   
     fh17353   404    YECRE-CGKFFSQSsTLMQHRKVH    426  

SM00355: domain 10 of 11, from 432 to 454: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cg+ f+  ++L++H+rvH   
     fh17353   432    FKCNE-CGRLFRENsSLVKHQRVH    454  

SM00355: domain 11 of 11, from 460 to 482: score 26.1, E = 0.0049
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f++ ++L +H r+H   
     fh17353   460    YECRE-CGKFFRHNsSLFKHRRIH    482  

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