hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-21022991/chunk_1/iprscan-20080809-21022991.nocrc
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Query sequence: fh17412
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00481.12.ls Protein phosphatase 2C                         213.8    3.5e-61   1
PF00481.12.fs Protein phosphatase 2C                         212.0    1.3e-60   1
PF01284.13.fs Membrane-associating domain                     40.9    1.6e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01284.13.fs   1/1     107   155 ..   111   185 ..    40.9  1.6e-11
PF00481.12.fs   1/1     213   478 ..     1   303 []   212.0  1.3e-60
PF00481.12.ls   1/1     213   478 ..     1   303 []   213.8  3.5e-61

Alignments of top-scoring domains:
PF01284.13.fs: domain 1 of 1, from 107 to 155: score 40.9, E = 1.6e-11
                   *->llaallyliasivlasalsdskgagtpsgsgelaasglsgqncsfvs
                      + +a+l+++++++la+++++sk++++p + g+ aa            
     fh17412   107    AFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAA------------ 141  

                   rddvnqylHYCVPQaaAivFgflatlly<-*
                                 +aAi+F+f++++ +   
     fh17412   142 --------------RAAIAFSFFSIFTW    155  

PF00481.12.fs: domain 1 of 1, from 213 to 478: score 212.0, E = 1.3e-60
                   *->ldvgvsrmqgwrksmeDahialknlnsss.sgkdsisffavfDghgG
                       +++++r  ++  + + a+++l +ln+++ ++++ + +++ fD +  
     fh17412   213    NGYDGNRVTNFVAQRLSAELLLGQLNAEHaEADVRRVLLQAFDVVER 259  

                   sqaakyagkhlekaltilaerksfpegnpnEwklsdledalrksfleadt
                   s ++  ++  +e    ++ +++++peg         ++++l  ++++  +
     fh17412   260 SFLESIDDALAE----KASLQSQLPEG--------VPQHQLPPQYQK--I 295  

                   deelrsaadsanhvltkedlssGsTAvvalirgqkklLyvANvGDSravL
                    e l++    ++       +s+G++Avva++ ++k  LyvANvG+ ra+L
     fh17412   296 LERLKT---LER------EISGGAMAVVAVLLNNK--LYVANVGTNRALL 334  

                   crngnaikl.vtqLtedHkpsdedEkrRIeaaGGfvsrvsgngRvnGvfL
                   c++  ++ l+vtqL +dH+ ++edE  R++++G    +++++g ++G+  
     fh17412   335 CKSTVDG-LqVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQ-- 381  

                   avSRAfGDfelKpnvtlgpels.l.erGifseeqpVsaePdvtsstkite
                   + +R +GD+  K+++t+++ ls +++       +p++aeP+++  ++  +
     fh17412   382 ESTRRIGDYKVKYGYTDIDLLSaAkS-------KPIIAEPEIH-GAQPLD 423  

                   skDeFliLAcDGlWDvvsdqeavdivrselsdgnksagspmeaaekLvde
                   +++ Fl+L++ Gl+  ++  +  + + +e+ +++      +e+a+++  +
     fh17412   424 GVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMI-----DTEFAKQTSLD 468  

                   AiargseDni<-*
                   A+a++++D +   
     fh17412   469 AVAQAVVDRV    478  

PF00481.12.ls: domain 1 of 1, from 213 to 478: score 213.8, E = 3.5e-61
                   *->ldvgvsrmqgwrksmeDahialknlnsss.sgkdsisffavfDghgG
                       +++++r  ++  + + a+++l +ln+++ ++++ + +++ fD +  
     fh17412   213    NGYDGNRVTNFVAQRLSAELLLGQLNAEHaEADVRRVLLQAFDVVER 259  

                   sqaakyagkhlekaltilaerksfpegnpnEwklsdledalrksfleadt
                   s ++  ++  +e    ++ +++++peg         ++++l  ++++  +
     fh17412   260 SFLESIDDALAE----KASLQSQLPEG--------VPQHQLPPQYQK--I 295  

                   deelrsaadsanhvltkedlssGsTAvvalirgqkklLyvANvGDSravL
                    e l++    ++       +s+G++Avva++ ++k  LyvANvG+ ra+L
     fh17412   296 LERLKT---LER------EISGGAMAVVAVLLNNK--LYVANVGTNRALL 334  

                   crngnaikl.vtqLtedHkpsdedEkrRIeaaGGfvsrvsgngRvnGvfL
                   c++  ++ l+vtqL +dH+ ++edE  R++++G    +++++g ++G+  
     fh17412   335 CKSTVDG-LqVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQ-- 381  

                   avSRAfGDfelKpnvtlgpels.l.erGifseeqpVsaePdvtsstkite
                   + +R +GD+  K+++t+++ ls +++       +p++aeP+++  ++  +
     fh17412   382 ESTRRIGDYKVKYGYTDIDLLSaAkS-------KPIIAEPEIH-GAQPLD 423  

                   skDeFliLAcDGlWDvvsdqeavdivrselsdgnksagspmeaaekLvde
                   +++ Fl+L++ Gl+  ++  +  + + +e+ +++      +e+a+++  +
     fh17412   424 GVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMI-----DTEFAKQTSLD 468  

                   AiargseDni<-*
                   A+a++++D +   
     fh17412   469 AVAQAVVDRV    478  

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