hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-21283176/chunk_1/iprscan-20080809-21283176.nocrc
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Query sequence: fh17714
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02854.9.ls MIF4G domain                                   254.3    2.3e-73   1
PF02854.9.fs MIF4G domain                                   252.5    8.4e-73   1
PF02847.7.fs MA3 domain                                     153.6      1e-45   1
PF02847.7.ls MA3 domain                                     155.6    1.2e-43   1
PF02020.8.fs eIF4-gamma/eIF5/eIF2-epsilon                   107.0    6.4e-32   1
PF02020.8.ls eIF4-gamma/eIF5/eIF2-epsilon                   108.9    1.3e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02854.9.ls   1/1     786  1014 ..     1   230 []   254.3  2.3e-73
PF02854.9.fs   1/1     786  1014 ..     1   230 []   252.5  8.4e-73
PF02847.7.fs   1/1    1267  1379 ..     1   116 []   153.6    1e-45
PF02847.7.ls   1/1    1267  1379 ..     1   116 []   155.6  1.2e-43
PF02020.8.fs   1/1    1543  1624 .]     1    87 []   107.0  6.4e-32
PF02020.8.ls   1/1    1543  1624 .]     1    87 []   108.9  1.3e-29

Alignments of top-scoring domains:
PF02854.9.ls: domain 1 of 1, from 786 to 1014: score 254.3, E = 2.3e-73
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                      +++v+++lnkL+  p++f++++k+  +l++++        +e lk +
     fh17714   786    FRRVRSILNKLT--PQMFQqLMKQVTQLAIDT--------EERLKGV 822  

                   lelifekaveepnfipayArLcalLnsknp......gekteFgslllnrl
                   ++lifeka++epnf+ ayA++c+ L ++  +++++++   +F++lllnr+
     fh17714   823 IDLIFEKAISEPNFSVAYANMCRCLMALKVpttekpTVTVNFRKLLLNRC 872  

                   qeeFekr........................eleaeleeeersdrkrrlg
                   q+eFek++++++  ++++++ ++  + +++++l++elee ++++r+r lg
     fh17714   873 QKEFEKDkdddevfekkqkemdeaataeergRLKEELEEARDIARRRSLG 922  

                   lvrFlgELynfqvltekiileilkelledlteedlqdqvrdeesleclll
                   +++F+gEL+++++lte+i+++++ +ll++++e          eslecl++
     fh17714   923 NIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE----------ESLECLCR 962  

                   lLetiGklLdnsekskklmdeilerlqkillkrdkshvrvesepelssri
                   lL+tiGk+Ld +ek+k++md+++ +++ki+++           ++ ssri
     fh17714   963 LLTTIGKDLD-FEKAKPRMDQYFNQMEKIIKE-----------KKTSSRI 1000 

                   rfmledlielrknk<-*
                   rfml+d+++lr ++   
     fh17714  1001 RFMLQDVLDLRGSN    1014 

PF02854.9.fs: domain 1 of 1, from 786 to 1014: score 252.5, E = 8.4e-73
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                      +++v+++lnkL+  p++f++++k+  +l++++        +e lk +
     fh17714   786    FRRVRSILNKLT--PQMFQqLMKQVTQLAIDT--------EERLKGV 822  

                   lelifekaveepnfipayArLcalLnsknp......gekteFgslllnrl
                   ++lifeka++epnf+ ayA++c+ L ++  +++++++   +F++lllnr+
     fh17714   823 IDLIFEKAISEPNFSVAYANMCRCLMALKVpttekpTVTVNFRKLLLNRC 872  

                   qeeFekr........................eleaeleeeersdrkrrlg
                   q+eFek++++++  ++++++ ++  + +++++l++elee ++++r+r lg
     fh17714   873 QKEFEKDkdddevfekkqkemdeaataeergRLKEELEEARDIARRRSLG 922  

                   lvrFlgELynfqvltekiileilkelledlteedlqdqvrdeesleclll
                   +++F+gEL+++++lte+i+++++ +ll++++e          eslecl++
     fh17714   923 NIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE----------ESLECLCR 962  

                   lLetiGklLdnsekskklmdeilerlqkillkrdkshvrvesepelssri
                   lL+tiGk+Ld +ek+k++md+++ +++ki+++           ++ ssri
     fh17714   963 LLTTIGKDLD-FEKAKPRMDQYFNQMEKIIKE-----------KKTSSRI 1000 

                   rfmledlielrknk<-*
                   rfml+d+++lr ++   
     fh17714  1001 RFMLQDVLDLRGSN    1014 

PF02847.7.fs: domain 1 of 1, from 1267 to 1379: score 153.6, E = 1e-45
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      l+kk + i+eEYl+ +D++EA++c++eL +p ++  ++V+++++++l
     fh17714  1267    LEKKSKAIIEEYLHLNDMKEAVQCVQELASP-SLLFIFVRHGVESTL 1312 

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   e+  ++++re++++LL++l +++++st q+++G+ ++le +eD+++DiP+
     fh17714  1313 ER--SAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPH 1360 

                   alrnLaeFvarlisdgiLp<-*
                    +++Lae+v++++++g++p   
     fh17714  1361 VWLYLAELVTPILQEGGVP    1379 

PF02847.7.ls: domain 1 of 1, from 1267 to 1379: score 155.6, E = 1.2e-43
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      l+kk + i+eEYl+ +D++EA++c++eL +p ++  ++V+++++++l
     fh17714  1267    LEKKSKAIIEEYLHLNDMKEAVQCVQELASP-SLLFIFVRHGVESTL 1312 

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   e+  ++++re++++LL++l +++++st q+++G+ ++le +eD+++DiP+
     fh17714  1313 ER--SAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPH 1360 

                   alrnLaeFvarlisdgiLp<-*
                    +++Lae+v++++++g++p   
     fh17714  1361 VWLYLAELVTPILQEGGVP    1379 

PF02020.8.fs: domain 1 of 1, from 1543 to 1624: score 107.0, E = 6.4e-32
                   *->eeeqidlLlalEefcveleeelvikllakilvslYDaDileEeaIlk
                      e++++++L+al++++v l e++  +ll++++++lYD+D+++E+a+++
     fh17714  1543    EQKELQALYALQALVVTL-EQP-PNLLRMFFDALYDEDVVKEDAFYS 1587 

                   WyekadsadeskEgkkkvrkqakkFvtWLkeAeEEEseed<-*
                   W++++d+a+++  gk++++k++++F++WL +++EEEs+ +   
     fh17714  1588 WESSKDPAEQQ--GKGVALKSVTAFFKWL-REAEEESDHN    1624 

PF02020.8.ls: domain 1 of 1, from 1543 to 1624: score 108.9, E = 1.3e-29
                   *->eeeqidlLlalEefcveleeelvikllakilvslYDaDileEeaIlk
                      e++++++L+al++++v l e++  +ll++++++lYD+D+++E+a+++
     fh17714  1543    EQKELQALYALQALVVTL-EQP-PNLLRMFFDALYDEDVVKEDAFYS 1587 

                   WyekadsadeskEgkkkvrkqakkFvtWLkeAeEEEseed<-*
                   W++++d+a+++  gk++++k++++F++WL +++EEEs+ +   
     fh17714  1588 WESSKDPAEQQ--GKGVALKSVTAFFKWL-REAEEESDHN    1624 

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