hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-21283176/chunk_1/iprscan-20080809-21283176.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fh17714
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00543                                                 257.9    7.9e-73   1
SM00544                                                 153.8    1.7e-41   1
SM00515                                                 123.1      3e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00543    1/1     786  1014 ..     1   227 []   257.9  7.9e-73
SM00544    1/1    1267  1379 ..     1   117 []   153.8  1.7e-41
SM00515    1/1    1533  1620 ..     1    92 []   123.1    3e-32

Alignments of top-scoring domains:
SM00543: domain 1 of 1, from 786 to 1014: score 257.9, E = 7.9e-73
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                       ++v++++nkL+p++f++l+k+  +l++d+          +e lk +
     fh17714   786    FRRVRSILNKLTPQMFQQLMKQVTQLAIDT----------EERLKGV 822  

                   ielifekaveepglqDklnfipayArLcalLnaknp..........dFgs
                   i+lifeka++ep      nf+ ayA++c++L+a+  +++++++ + +F++
     fh17714   823 IDLIFEKAISEP------NFSVAYANMCRCLMALKVpttekptvtvNFRK 866  

                   llldrlqeeFekrkdd.eekek.lepkQvi..c.daeee.ele.eleeee
                   lll+r+q+eFek+kdd+e++ek++++   ++++ +aee+++l++elee +
     fh17714   867 LLLNRCQKEFEKDKDDdEVFEKkQKE---MdeAaTAEERgRLKeELEEAR 913  

                   eknrkrrlglvrFlgELynfqvltskiilellkelledltefslecllsl
                    ++r+r lg+++F+gEL+++++lt+ i+++++ +ll++++e+slecl++l
     fh17714   914 DIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRL 963  

                   LetcGkdLe.ekspklldellerlqdill...lsprlrfmledlielrkn
                   L+t+GkdL+ ek++ ++d+++ ++++i+++++ s+r+rfml+d+++lr +
     fh17714   964 LTTIGKDLDfEKAKPRMDQYFNQMEKIIKekkTSSRIRFMLQDVLDLRGS 1013 

                   k<-*
                   +   
     fh17714  1014 N    1014 

SM00544: domain 1 of 1, from 1267 to 1379: score 153.8, E = 1.7e-41
                   *->lkkkifliikEylssgDtdEAvhclleLklpeefhhevvkvlltlaL
                      l+kk + ii+Eyl+ +D++EAv+c+ eL +p +++ ++v++ ++++L
     fh17714  1267    LEKKSKAIIEEYLHLNDMKEAVQCVQELASP-SLLFIFVRHGVESTL 1312 

                   eeatvkrtyremysvLLsrlcqanvistkqfekgFwrllesleDlelDiP
                   e+   ++ +re++++LL++l +a+++st q+++g+ ++le +eD+e+DiP
     fh17714  1313 ER---SAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIP 1359 

                   dalrnLaeFlarlisdgiLp<-*
                   +++++Lae++++++++g++p   
     fh17714  1360 HVWLYLAELVTPILQEGGVP    1379 

SM00515: domain 1 of 1, from 1533 to 1620: score 123.1, E = 3e-32
                   *->gpllkfllkdeeeqlelLyaiEefcvelekellkllpkilksLYDeD
                       +ll ++l+de+ +l++Lya+++++v le+ + +ll++++++LYDeD
     fh17714  1533    AKLLQKYLCDEQKELQALYALQALVVTLEQ-PPNLLRMFFDALYDED 1578 

                   vleEeaIlkWyekkSKkyvsaeekskvrknakpqFvtWLqeAEEE<-*
                   v+ E+a+++W+++k  +++++++k++++k++++ F++WL+eAEEE   
     fh17714  1579 VVKEDAFYSWESSK--DPAEQQGKGVALKSVTA-FFKWLREAEEE    1620 

//